Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 7.8e-189 663.7 347 100.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 7.6e-160 567.4 537 63.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.8e-140 500.7 524 58.8
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.2e-98 363.2 298 71.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.0e-67 260.4 271 55.7
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-65 254.6 270 54.4
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 6.6e-63 245.4 269 51.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 6.6e-63 245.4 271 50.6
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.3e-61 241.1 271 49.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.8e-60 237.3 274 48.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.8e-60 237.3 274 48.9
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 9.0e-60 235.0 269 51.3
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-59 234.2 272 50.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.0e-59 233.8 272 50.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 8.4e-58 228.4 246 54.9
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.2e-57 226.1 255 49.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.1e-56 223.8 272 46.3
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.0e-55 219.9 272 48.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.5e-54 216.9 270 48.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.8e-53 213.4 272 46.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.9e-52 208.8 269 45.4
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.5e-51 207.6 270 47.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.0e-51 207.2 292 44.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.7e-50 204.1 270 47.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.8e-50 203.0 269 45.7
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-49 201.1 271 45.8
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.4e-49 201.1 264 43.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.9e-49 200.7 271 44.3
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 5.4e-49 199.1 260 45.0
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-48 197.2 272 42.6
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.7e-48 196.8 275 42.2
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.0e-48 195.7 270 43.3
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 6.0e-48 195.7 269 46.5
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 6.0e-48 195.7 268 42.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 3.0e-47 193.4 271 45.8
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 6.7e-47 192.2 274 42.3
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.1e-46 191.4 267 42.3
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.3e-45 188.0 271 41.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.4e-44 184.5 268 43.7
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.1e-44 183.3 269 42.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.4e-43 179.9 271 41.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.3e-42 177.9 238 44.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-42 177.6 278 41.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.2e-42 177.2 267 40.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 6.5e-42 175.6 276 44.2
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.4e-41 174.5 271 41.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 4.2e-41 172.9 228 43.9
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 9.3e-41 171.8 270 43.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-40 171.4 267 40.4
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-40 171.4 254 42.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 6.0e-40 169.1 269 41.3
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.0e-39 168.3 172 51.2
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.3e-39 167.2 276 39.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.7e-39 165.6 245 40.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-38 164.9 268 40.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.5e-38 164.5 226 41.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.9e-38 164.1 268 40.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.8e-37 160.2 270 40.7
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.8e-37 160.2 270 40.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 8.2e-37 158.7 265 38.9
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.4e-36 157.9 312 34.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.4e-36 157.9 268 39.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.8e-36 157.5 271 37.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.4e-36 157.1 271 35.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 9.0e-36 155.2 266 36.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-35 154.8 273 40.3
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.5e-35 152.9 192 42.7
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.5e-35 152.9 247 38.1
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.6e-35 152.1 208 41.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.0e-34 151.8 270 35.2
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.2e-34 150.6 273 39.9
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.2e-34 150.6 247 37.7
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.0e-34 149.4 270 35.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.5e-34 149.1 266 35.0
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.1e-33 148.3 268 39.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.9e-33 147.5 254 37.0
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.1e-33 145.6 260 38.1
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.7e-32 143.7 260 36.9
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.7e-32 143.7 242 35.1
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 7.9e-32 142.1 270 34.8
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 7.9e-32 142.1 267 36.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.8e-31 141.0 266 35.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.1e-31 139.4 266 34.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.1e-31 139.4 255 35.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 6.7e-31 139.0 266 36.5
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.5e-30 137.1 323 33.1
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.1e-28 130.2 218 35.3
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.5e-27 127.9 271 33.2
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.0e-26 125.2 244 33.6
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.9e-26 123.6 271 35.1
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 5.0e-26 122.9 253 31.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 5.0e-26 122.9 245 31.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 5.0e-26 122.9 267 32.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.5e-26 122.5 242 32.6
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 6.5e-26 122.5 260 36.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 8.5e-26 122.1 270 31.1
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-25 121.3 264 31.8
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.9e-25 120.9 252 32.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.5e-25 120.6 278 29.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 7.2e-25 119.0 268 33.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 7.2e-25 119.0 249 32.1
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 9.4e-25 118.6 279 31.2
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.7e-24 117.1 243 30.9
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.1e-24 115.9 246 30.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 7.9e-24 115.5 270 33.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.8e-23 114.4 240 31.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.8e-23 114.4 242 31.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.9e-23 113.2 271 33.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.7e-23 112.5 241 32.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 8.8e-23 112.1 245 29.4
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.8e-23 112.1 250 29.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-22 110.2 244 29.1
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.3e-22 109.8 272 34.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 5.7e-22 109.4 245 27.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.7e-22 109.4 316 29.1
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.4e-22 109.0 158 36.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.3e-21 108.2 309 33.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.7e-21 107.8 258 31.4
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.7e-21 107.8 253 28.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.2e-21 105.5 244 33.6
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 8.2e-21 105.5 256 29.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.4e-20 104.8 244 32.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.4e-20 104.8 244 32.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 3.1e-20 103.6 268 30.2
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 4.1e-20 103.2 258 28.7
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 4.1e-20 103.2 118 46.6
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.3e-20 102.8 257 28.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.9e-20 102.4 268 28.4
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.0e-19 100.9 263 27.0
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 5.9e-19 99.4 128 41.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.9e-18 97.1 180 35.0
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.8e-18 96.7 250 28.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.8e-18 96.7 204 28.4
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.5e-18 95.9 182 36.3
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.4e-17 94.7 274 31.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.4e-17 94.7 271 31.0
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-16 90.9 124 40.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-16 90.5 236 28.0
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.7e-16 89.7 244 28.7
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 6.1e-16 89.4 158 36.1
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.0e-15 88.6 196 34.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 3.9e-15 86.7 246 29.3
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.1e-15 86.3 130 39.2
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 6.7e-15 85.9 127 35.4
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.1e-14 85.1 242 26.4
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.6e-14 84.0 260 28.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 7.4e-14 82.4 242 27.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.7e-14 82.0 253 28.1
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.7e-13 81.3 241 28.6
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.8e-12 77.8 157 29.3
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 2.0e-11 74.3 243 26.3
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.0e-11 74.3 243 26.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.0e-11 74.3 240 27.5
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.0e-11 74.3 137 29.9
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.6e-11 73.9 232 25.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.5e-11 73.6 243 25.9
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.5e-11 73.6 272 26.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.5e-11 73.6 272 26.1
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.5e-11 73.2 243 26.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 9.7e-06 55.5 78 37.2


User provided reference genes

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