Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g032180.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 2.1e-108 395.6 185 100.0
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 8.0e-108 393.7 185 99.5
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 1.2e-100 369.8 185 89.7
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 4.9e-97 357.8 185 90.3
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 4.0e-91 338.2 185 84.9
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 2.0e-90 335.9 184 82.6
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 8.6e-86 320.5 182 76.9
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 1.2e-84 316.6 185 74.6
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 1.2e-84 316.6 184 76.6
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 1.2e-84 316.6 184 76.6
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 4.7e-84 314.7 184 75.5
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 4.7e-84 314.7 184 76.1
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 1.8e-83 312.8 185 74.1
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 1.8e-83 312.8 184 75.0
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 1.8e-83 312.8 184 76.1
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 2.4e-83 312.4 184 75.0
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 2.4e-83 312.4 184 76.1
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 3.1e-83 312.0 185 73.5
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 4.0e-83 311.6 184 75.0
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 4.0e-83 311.6 184 75.5
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 5.2e-83 311.2 184 73.9
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 8.9e-83 310.5 185 75.1
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 1.5e-82 309.7 184 74.5
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 1.5e-82 309.7 185 73.0
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 2.0e-82 309.3 185 73.5
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 2.0e-82 309.3 184 75.0
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 4.4e-82 308.1 184 74.5
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 5.8e-82 307.8 186 74.7
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 5.8e-82 307.8 184 73.9
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 7.6e-82 307.4 184 73.9
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 7.6e-82 307.4 184 73.9
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 7.6e-82 307.4 184 72.8
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 7.6e-82 307.4 184 74.5
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 9.9e-82 307.0 184 73.9
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 9.9e-82 307.0 184 72.8
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 1.3e-81 306.6 184 72.8
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 1.3e-81 306.6 184 73.4
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 2.9e-81 305.4 184 72.8
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 3.8e-81 305.1 180 73.9
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 4.9e-81 304.7 184 72.3
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 4.9e-81 304.7 184 73.9
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 4.9e-81 304.7 184 73.4
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 6.4e-81 304.3 180 75.0
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 8.4e-81 303.9 186 72.6
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 1.1e-80 303.5 184 70.7
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 1.1e-80 303.5 194 70.6
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.4e-80 303.1 185 73.0
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 1.4e-80 303.1 184 72.8
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 1.9e-80 302.8 184 72.3
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 2.4e-80 302.4 184 73.4
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 2.4e-80 302.4 184 72.3
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 2.4e-80 302.4 185 73.5
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 2.4e-80 302.4 185 73.5
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 3.2e-80 302.0 184 72.8
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 3.2e-80 302.0 184 73.4
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 3.2e-80 302.0 185 72.4
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 4.2e-80 301.6 180 72.8
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.4e-80 301.2 183 71.6
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 5.4e-80 301.2 179 73.2
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 7.1e-80 300.8 184 73.4
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 7.1e-80 300.8 184 71.2
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 7.1e-80 300.8 183 72.7
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 1.2e-79 300.1 184 71.2
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 1.6e-79 299.7 184 71.7
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 3.5e-79 298.5 185 73.0
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 6.0e-79 297.7 184 70.1
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 6.0e-79 297.7 185 72.4
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 7.8e-79 297.4 178 74.7
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 7.8e-79 297.4 184 69.0
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 1.0e-78 297.0 180 72.8
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 1.3e-78 296.6 181 71.8
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 1.3e-78 296.6 184 70.1
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 1.3e-78 296.6 184 70.7
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 1.7e-78 296.2 184 70.7
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 2.3e-78 295.8 181 72.4
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 3.9e-78 295.0 184 70.7
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 3.9e-78 295.0 184 70.7
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 3.9e-78 295.0 184 72.8
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 3.9e-78 295.0 184 71.7
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 5.1e-78 294.7 184 70.1
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 6.6e-78 294.3 185 71.9
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 6.6e-78 294.3 184 69.6
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 1.1e-77 293.5 184 72.8
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 1.9e-77 292.7 184 71.2
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 1.9e-77 292.7 180 72.2
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 2.5e-77 292.4 184 70.7
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 2.5e-77 292.4 184 69.0
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 2.5e-77 292.4 184 69.0
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 3.3e-77 292.0 183 71.6
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 3.3e-77 292.0 184 67.4
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 4.3e-77 291.6 180 73.3
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 4.3e-77 291.6 184 67.9
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 4.3e-77 291.6 184 70.7
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 7.3e-77 290.8 184 68.5
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 9.6e-77 290.4 181 72.4
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 9.6e-77 290.4 183 71.0
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 9.6e-77 290.4 183 71.0
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 2.8e-76 288.9 177 72.9
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 3.6e-76 288.5 186 69.9
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 3.6e-76 288.5 209 64.6
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 4.8e-76 288.1 180 68.3
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 6.2e-76 287.7 186 69.4
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 8.1e-76 287.3 183 70.5
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 8.1e-76 287.3 184 72.8
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 8.1e-76 287.3 184 67.9
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.1e-75 287.0 184 67.4
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 1.4e-75 286.6 185 66.5
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 1.8e-75 286.2 185 70.3
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 1.8e-75 286.2 184 69.6
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 3.1e-75 285.4 179 69.8
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 3.1e-75 285.4 185 68.6
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 3.1e-75 285.4 170 74.1
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 4.0e-75 285.0 184 72.3
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 5.3e-75 284.6 185 70.3
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 5.3e-75 284.6 183 68.3
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 6.9e-75 284.3 174 72.4
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 6.9e-75 284.3 180 70.6
BcaNung01121 Brassica carinata HOM05D004169 ORTHO05D004942 6.9e-75 284.3 181 70.2
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 6.9e-75 284.3 178 70.8
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 1.2e-74 283.5 180 70.6
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 1.2e-74 283.5 180 70.6
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 1.5e-74 283.1 181 70.2
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 1.5e-74 283.1 186 68.3
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 2.0e-74 282.7 185 69.2
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 2.0e-74 282.7 185 69.2
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 2.6e-74 282.3 185 69.2
SEGI_38743 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 2.6e-74 282.3 179 66.5
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 3.4e-74 282.0 180 70.0
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 5.8e-74 281.2 185 68.1
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 7.6e-74 280.8 183 68.9
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 6.4e-73 277.7 188 69.1
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 1.9e-72 276.2 221 57.5
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 7.1e-72 274.2 208 63.0
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 6.0e-71 271.2 234 54.3
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 7.4e-69 264.2 184 65.2
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 3.4e-66 255.4 227 55.1
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 1.6e-63 246.5 174 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 2.7e-63 245.7 185 57.3
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 4.6e-63 245.0 165 64.2
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 2.5e-61 239.2 154 71.4
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 5.6e-61 238.0 176 65.9
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 1.6e-60 236.5 186 56.5
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 2.4e-59 232.6 179 61.5
Glyma.06G026500 Glycine max HOM05D004169 ORTHO05D004942 3.3e-53 212.2 147 68.7
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 9.6e-53 210.7 166 55.4
SalBow7G3670 Salvia bowleyana HOM05D004169 ORTHO05D004942 3.4e-42 175.6 99 77.8
Gorai.009G270900 Gossypium raimondii HOM05D004169 ORTHO05D004942 8.5e-41 171.0 212 44.3
Psat5g014480 Pisum sativum HOM05D004169 ORTHO05D004942 9.4e-40 167.5 105 70.5
Gohir.D05G259151 Gossypium hirsutum HOM05D004169 ORTHO05D004942 7.9e-39 164.5 199 45.2
Sed0000348 Sechium edule HOM05D004169 ORTHO05D004942 7.9e-39 164.5 100 72.0
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 3.0e-30 136.0 91 72.5
TPR.G34370 Trifolium pratense HOM05D004169 ORTHO05D004942 6.5e-25 118.2 73 72.6
Cre01.g000300 Chlamydomonas reinhardtii HOM05D004169 ORTHO05D004942 1.6e-23 113.6 164 39.0
Gohir.D05G191200 Gossypium hirsutum HOM05D004169 ORTHO05D004942 6.7e-22 108.2 78 65.4
CARHR269140 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.7e-20 103.6 61 72.1
Cfa027320 Carpinus fangiana HOM05D004169 ORTHO05D004942 5.5e-16 88.6 179 29.1
PRCOL_00002006 Prasinoderma coloniale HOM05D004169 ORTHO05D004942 7.2e-16 88.2 145 33.1
CARHR269150 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.3e-09 67.4 37 83.8
DCAR_009944 Daucus carota HOM05D004169 ORTHO05D004942 1.4e-06 57.4 31 71.0
Lsat_1_v5_gn_9_64701 Lactuca sativa HOM05D004169 ORTHO05D004942 2.3e-06 56.6 30 70.0


User provided reference genes

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