Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g032170.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 4.9e-96 354.4 169 100.0
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 5.5e-95 350.9 168 99.4
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 5.5e-87 324.3 169 91.1
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 2.3e-85 318.9 172 90.1
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 2.3e-85 318.9 168 91.1
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 1.9e-79 299.3 157 90.4
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 8.8e-77 290.4 165 85.5
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 2.0e-76 289.3 178 82.6
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 1.3e-75 286.6 160 85.0
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.7e-75 286.2 177 80.8
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 4.8e-75 284.6 171 80.1
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 4.8e-75 284.6 171 80.1
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 6.3e-75 284.3 156 87.2
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.4e-74 283.1 175 81.1
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 5.3e-74 281.2 173 79.2
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 6.9e-74 280.8 141 90.8
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 9.1e-74 280.4 157 83.4
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 9.1e-74 280.4 157 83.4
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 1.2e-73 280.0 174 77.0
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 1.2e-73 280.0 162 84.0
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 2.6e-73 278.9 179 76.5
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 2.6e-73 278.9 174 76.4
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 2.6e-73 278.9 173 79.8
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 3.4e-73 278.5 174 76.4
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 1.7e-72 276.2 158 84.2
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 1.7e-72 276.2 167 79.0
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 2.2e-72 275.8 163 80.4
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 3.8e-72 275.0 160 81.9
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 3.8e-72 275.0 155 85.8
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 3.8e-72 275.0 165 80.0
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.0e-72 274.6 157 82.8
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 5.0e-72 274.6 158 82.9
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 6.5e-72 274.2 166 76.5
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 8.5e-72 273.9 158 82.3
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 8.5e-72 273.9 157 82.8
Gohir.D05G191200 Gossypium hirsutum HOM05D004169 ORTHO05D004942 8.5e-72 273.9 161 82.6
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 8.5e-72 273.9 176 76.1
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 1.4e-71 273.1 169 77.5
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 1.9e-71 272.7 161 80.1
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 1.9e-71 272.7 173 77.5
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 3.2e-71 271.9 137 91.2
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 3.2e-71 271.9 161 82.0
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 3.2e-71 271.9 154 81.8
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 3.2e-71 271.9 157 81.5
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 4.2e-71 271.6 162 81.5
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 4.2e-71 271.6 151 82.8
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 5.5e-71 271.2 159 80.5
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 7.2e-71 270.8 174 74.7
SalBow7G3670 Salvia bowleyana HOM05D004169 ORTHO05D004942 7.2e-71 270.8 177 75.1
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 7.2e-71 270.8 173 75.1
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 9.4e-71 270.4 158 79.7
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 9.4e-71 270.4 178 75.8
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 1.2e-70 270.0 175 76.0
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 1.2e-70 270.0 161 82.0
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 1.2e-70 270.0 185 73.5
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 1.6e-70 269.6 175 76.0
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 1.6e-70 269.6 173 78.6
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 3.6e-70 268.5 140 87.9
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 3.6e-70 268.5 164 79.3
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 4.7e-70 268.1 157 80.9
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 4.7e-70 268.1 156 80.1
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 6.1e-70 267.7 158 80.4
Psat5g014480 Pisum sativum HOM05D004169 ORTHO05D004942 6.1e-70 267.7 154 81.8
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 7.9e-70 267.3 147 85.0
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 7.9e-70 267.3 178 75.3
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 1.0e-69 266.9 162 77.8
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 1.0e-69 266.9 177 72.9
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.0e-69 266.9 175 72.6
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 1.4e-69 266.5 155 81.3
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 1.4e-69 266.5 157 80.3
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.4e-69 266.5 179 73.7
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 1.4e-69 266.5 163 78.5
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 1.8e-69 266.2 189 70.4
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 1.8e-69 266.2 170 73.5
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 1.8e-69 266.2 140 85.7
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 1.8e-69 266.2 170 75.3
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 1.8e-69 266.2 165 77.6
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 2.3e-69 265.8 169 73.4
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 2.3e-69 265.8 180 71.1
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 2.3e-69 265.8 167 75.4
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 2.3e-69 265.8 165 75.8
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 3.0e-69 265.4 175 73.7
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 3.0e-69 265.4 163 77.9
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 3.9e-69 265.0 178 72.5
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 3.9e-69 265.0 179 73.2
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 3.9e-69 265.0 142 87.3
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 3.9e-69 265.0 140 86.4
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 5.1e-69 264.6 140 87.1
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 5.1e-69 264.6 156 78.2
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 6.7e-69 264.2 168 76.8
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 8.8e-69 263.8 135 87.4
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 8.8e-69 263.8 154 78.6
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 8.8e-69 263.8 149 81.2
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 8.8e-69 263.8 163 76.7
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 1.1e-68 263.5 155 80.6
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 1.5e-68 263.1 157 79.0
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 1.5e-68 263.1 177 71.8
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 1.5e-68 263.1 154 79.2
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 1.5e-68 263.1 150 82.7
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 1.5e-68 263.1 176 73.9
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 2.6e-68 262.3 135 86.7
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 2.6e-68 262.3 163 76.1
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 4.4e-68 261.5 160 78.1
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 4.4e-68 261.5 166 74.7
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 5.7e-68 261.2 140 85.7
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 5.7e-68 261.2 149 81.9
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 5.7e-68 261.2 165 77.0
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 5.7e-68 261.2 140 85.7
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 5.7e-68 261.2 140 85.7
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 5.7e-68 261.2 165 77.0
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 5.7e-68 261.2 180 70.6
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 5.7e-68 261.2 166 77.1
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 5.7e-68 261.2 146 83.6
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 7.4e-68 260.8 168 76.8
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 9.7e-68 260.4 156 78.8
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 9.7e-68 260.4 177 72.9
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 9.7e-68 260.4 137 87.6
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 1.3e-67 260.0 155 78.7
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 1.7e-67 259.6 136 88.2
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 2.8e-67 258.8 165 77.6
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 3.7e-67 258.5 160 76.9
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 3.7e-67 258.5 147 78.9
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 1.1e-66 256.9 165 75.8
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 1.1e-66 256.9 160 76.2
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 1.1e-66 256.9 160 76.2
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 1.8e-66 256.1 141 83.7
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 3.1e-66 255.4 160 78.1
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 3.1e-66 255.4 157 78.3
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 9.1e-66 253.8 167 73.7
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 7.7e-65 250.8 136 85.3
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 1.7e-64 249.6 141 80.9
Sed0000348 Sechium edule HOM05D004169 ORTHO05D004942 6.5e-64 247.7 155 77.4
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 3.2e-63 245.4 170 69.4
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 1.4e-61 240.0 152 75.7
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 5.2e-61 238.0 149 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 1.7e-59 233.0 137 76.6
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 2.2e-56 222.6 110 91.8
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 3.8e-56 221.9 171 62.6
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 3.2e-55 218.8 109 90.8
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 5.5e-55 218.0 188 63.3
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 7.2e-55 217.6 162 65.4
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 1.6e-54 216.5 109 89.9
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 1.8e-53 213.0 143 75.5
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 9.7e-52 207.2 184 59.8
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 1.0e-48 197.2 101 88.1
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.2e-46 190.3 174 56.9
SEGI_29088 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 4.0e-45 185.3 142 66.2
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 3.4e-36 155.6 137 54.0
DCAR_009944 Daucus carota HOM05D004169 ORTHO05D004942 1.9e-26 123.2 61 88.5
SHI08091 Sapria himalayana HOM05D004169 ORTHO05D004942 2.4e-26 122.9 110 59.1
Gorai.009G270900 Gossypium raimondii HOM05D004169 ORTHO05D004942 2.3e-24 116.3 161 42.9
Gohir.D05G259151 Gossypium hirsutum HOM05D004169 ORTHO05D004942 2.4e-18 96.3 161 39.8
Cre01.g000300 Chlamydomonas reinhardtii HOM05D004169 ORTHO05D004942 1.1e-13 80.9 136 33.1
Cfa027320 Carpinus fangiana HOM05D004169 ORTHO05D004942 5.2e-13 78.6 72 52.8
COL.COLO4_27227 Corchorus olitorius HOM05D004169 ORTHO05D004942 3.3e-07 59.3 55 60.0
Sabra19G0077100 Salix brachista HOM05D000916 ORTHO05D007921 9.5e-07 57.8 76 35.5
Sabra19G0079700 Salix brachista HOM05D000916 ORTHO05D007921 9.5e-07 57.8 76 35.5
SMO361G0114 Selaginella moellendorffii HOM05D000916 ORTHO05D007921 2.8e-06 56.2 55 50.9
Gohir.D13G058800 Gossypium hirsutum HOM05D000916 ORTHO05D007921 3.6e-06 55.8 75 38.7
Potri.019G063900 Populus trichocarpa HOM05D000916 ORTHO05D007921 3.6e-06 55.8 76 35.5
Gohir.A13G063400 Gossypium hirsutum HOM05D000916 ORTHO05D007921 4.7e-06 55.5 75 38.7
Gorai.013G066300 Gossypium raimondii HOM05D000916 ORTHO05D007921 4.7e-06 55.5 75 38.7
SMO361G0121 Selaginella moellendorffii HOM05D000916 ORTHO05D007921 4.7e-06 55.5 45 53.3


User provided reference genes

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