Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 1.2e-289 999.2 519 100.0
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 1.7e-259 899.0 489 96.7
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 5.7e-244 847.4 491 90.8
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 2.7e-209 732.3 490 77.6
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 9.5e-207 723.8 491 78.4
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 2.4e-178 629.4 493 67.3
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 6.5e-155 551.6 497 56.7
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 3.9e-152 542.3 497 56.3
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 2.8e-150 536.2 495 55.8
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 1.4e-149 533.9 504 55.2
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 2.5e-146 523.1 491 55.2
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 2.5e-143 513.1 500 55.8
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.3e-142 510.8 498 53.4
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 5.9e-140 501.9 482 54.1
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 1.9e-138 496.9 498 54.0
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 2.7e-137 493.0 499 52.7
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.4e-136 490.7 501 52.5
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 8.8e-136 488.0 491 52.5
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 8.8e-136 488.0 495 53.3
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 1.1e-135 487.6 494 51.8
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 2.0e-135 486.9 505 50.9
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.8e-134 483.0 483 52.8
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 1.4e-133 480.7 510 50.8
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.8e-133 480.3 483 52.4
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 4.1e-133 479.2 502 51.0
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 5.3e-133 478.8 501 51.3
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 3.5e-132 476.1 498 51.0
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.7e-131 473.8 499 51.7
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 8.5e-131 471.5 499 51.9
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 8.5e-131 471.5 495 51.3
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 4.2e-130 469.2 500 50.8
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 2.6e-127 459.9 494 51.4
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 2.2e-126 456.8 495 51.1
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 1.1e-125 454.5 501 49.9
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 3.1e-125 453.0 501 49.3
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 4.1e-125 452.6 438 53.2
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 5.9e-124 448.7 501 48.7
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 2.9e-123 446.4 496 50.0
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.2e-121 441.0 498 50.6
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.6e-121 440.7 501 48.5
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 7.0e-117 425.2 518 46.7
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.2e-116 424.5 502 48.4
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 1.7e-115 420.6 497 46.5
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 5.5e-114 415.6 503 45.9
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 1.4e-112 411.0 508 47.6
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 4.0e-112 409.5 424 52.1
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 5.2e-112 409.1 504 46.0
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 3.4e-111 406.4 512 45.5
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 4.4e-111 406.0 417 51.3
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 5.7e-111 405.6 502 46.8
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 1.3e-110 404.4 505 46.5
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.2e-110 403.7 411 53.0
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 2.2e-110 403.7 497 46.7
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.8e-110 403.3 411 52.8
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 4.9e-110 402.5 502 45.2
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 6.3e-110 402.1 498 45.8
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 1.4e-109 401.0 426 51.2
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 1.2e-108 397.9 505 46.1
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 1.6e-108 397.5 505 46.5
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 1.6e-108 397.5 505 46.5
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 3.5e-108 396.4 504 45.2
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 3.5e-108 396.4 500 46.6
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 2.3e-104 383.6 503 43.7
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 2.6e-103 380.2 508 44.7
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 2.7e-100 370.2 412 49.5
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 3.5e-100 369.8 408 49.0
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 6.2e-97 359.0 414 49.5
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 2.3e-96 357.1 414 46.9
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 7.0e-93 345.5 421 46.3
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 7.8e-84 315.5 507 39.1
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.3e-83 314.7 262 58.4
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 2.8e-81 307.0 225 66.2
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 1.6e-76 291.2 539 38.4
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 1.0e-75 288.5 480 40.0
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.7e-75 287.7 365 46.0
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 6.9e-64 249.2 553 32.4
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 2.7e-60 237.3 496 34.3
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 1.5e-58 231.5 496 33.5
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.0e-38 163.3 160 55.6
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 1.0e-30 139.0 116 57.8
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 6.5e-30 136.3 467 23.6
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 2.1e-28 131.3 437 26.8
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 1.2e-10 72.4 242 27.7
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 2.2e-06 58.2 112 31.2
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 2.9e-06 57.8 98 37.8


User provided reference genes

Program Settings