Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 0.0e+00 1366.3 762 100.0
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 0.0e+00 1348.2 762 97.2
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 0.0e+00 1104.7 817 81.9
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 8.9e-270 933.7 787 71.8
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 9.8e-269 930.2 823 68.7
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.2e-261 906.7 823 67.8
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.0e-241 840.5 782 64.8
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 3.0e-140 503.4 775 46.2
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 3.2e-126 456.8 577 50.6
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 7.3e-123 445.7 786 43.4
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 2.1e-122 444.1 779 43.1
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 1.1e-118 431.8 797 42.8
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 5.4e-118 429.5 913 39.0
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 2.7e-117 427.2 781 43.0
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 7.9e-117 425.6 795 41.8
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 3.3e-115 420.2 695 42.3
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 7.4e-115 419.1 616 47.4
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 2.6e-112 410.6 790 39.6
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 5.8e-112 409.5 796 41.6
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 7.1e-110 402.5 778 43.1
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 7.9e-109 399.1 813 40.5
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 6.7e-108 396.0 770 41.3
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.1e-107 395.2 828 40.5
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 1.8e-105 387.9 807 39.3
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 2.0e-104 384.4 625 43.0
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 3.4e-104 383.6 787 40.3
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 2.2e-103 380.9 809 39.3
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 3.8e-103 380.2 853 37.3
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 3.8e-103 380.2 882 37.0
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 3.2e-102 377.1 818 38.9
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 3.7e-98 363.6 620 42.4
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.4e-97 361.7 781 37.9
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 1.8e-97 361.3 773 39.5
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 1.8e-97 361.3 783 40.1
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 1.8e-97 361.3 794 37.3
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 6.5e-95 352.8 820 39.4
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.4e-94 351.7 580 42.6
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.9e-94 351.3 843 37.1
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.5e-94 350.9 747 40.0
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 4.6e-93 346.7 630 40.2
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.8e-92 344.7 793 37.8
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 3.9e-92 343.6 629 40.7
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.9e-91 341.3 601 44.4
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 2.5e-91 340.9 773 37.1
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 9.7e-91 339.0 573 41.9
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 2.4e-89 334.3 776 37.5
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 2.4e-89 334.3 683 40.1
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 4.1e-89 333.6 786 36.8
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 1.5e-88 331.6 751 38.2
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 2.2e-87 327.8 543 41.1
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 3.8e-87 327.0 766 37.2
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.4e-86 325.1 577 43.0
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 7.2e-86 322.8 790 36.1
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 7.2e-86 322.8 549 45.0
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.1e-85 321.2 774 36.4
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 3.6e-85 320.5 553 43.8
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.8e-84 318.2 774 36.6
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 5.1e-84 316.6 773 36.6
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 1.1e-83 315.5 591 44.2
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 2.6e-83 314.3 808 36.4
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 5.7e-83 313.2 807 36.6
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 7.4e-83 312.8 796 36.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 9.7e-83 312.4 541 41.2
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.3e-82 312.0 782 37.6
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 1.7e-82 311.6 602 43.4
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 6.3e-82 309.7 567 45.5
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 2.4e-81 307.8 780 35.9
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 2.4e-81 307.8 746 35.9
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 3.4e-80 303.9 783 36.3
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.9e-78 298.1 805 35.7
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 7.4e-75 286.2 774 37.7
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.9e-72 276.6 591 40.1
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.2e-71 274.6 555 39.3
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.2e-71 274.6 555 39.3
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 3.2e-70 270.8 600 38.5
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.5e-70 270.0 788 35.3
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 8.0e-69 266.2 714 36.1
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 4.0e-68 263.8 287 53.7
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.1e-62 245.7 616 34.3
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.9e-62 245.0 770 31.6
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 2.1e-61 241.5 712 33.6
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 3.0e-60 237.7 629 38.5
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 7.0e-57 226.5 620 36.9
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 3.5e-56 224.2 594 37.4
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.0e-55 222.6 609 36.5
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 2.3e-55 221.5 638 36.2
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 2.9e-55 221.1 580 33.1
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 3.3e-54 217.6 595 37.1
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 1.6e-53 215.3 777 31.0
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 2.1e-53 214.9 688 32.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.6e-53 214.2 394 38.8
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 2.3e-52 211.5 613 36.5
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 8.9e-52 209.5 596 34.7
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.0e-51 208.4 612 36.4
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.0e-51 208.4 612 36.4
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 2.6e-51 208.0 612 36.4
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 4.4e-51 207.2 629 34.2
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 9.8e-51 206.1 634 35.3
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.8e-50 204.5 752 31.1
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.4e-49 202.2 608 33.4
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 7.3e-46 189.9 610 34.6
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.8e-44 185.3 426 39.0
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 6.0e-40 170.2 470 32.6
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 3.3e-38 164.5 154 64.3
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.8e-37 161.4 304 41.4
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.9e-33 148.7 519 32.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 4.6e-32 144.1 609 31.7
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 3.3e-30 137.9 535 30.8
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 2.2e-26 125.2 499 28.7
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.7e-24 118.2 346 34.4
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 1.1e-22 112.8 200 41.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.8e-18 97.8 721 24.7
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.8e-18 97.8 721 24.7
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.4e-17 95.9 142 45.8
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.9e-17 95.5 147 46.9
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 1.1e-09 69.7 61 63.9


User provided reference genes

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