Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g025200.1 Solanum lycopersicum HOM05D002646 ORTHO05D002782 1.5e-37 161.0 311 100.0
Sopen07g013020 Solanum pennellii HOM05D002646 ORTHO05D002782 2.1e-36 157.1 82 98.8
Sopen07g013050 Solanum pennellii HOM05D002646 ORTHO05D002782 2.1e-36 157.1 82 98.8
PGSC0003DMG400005374 Solanum tuberosum HOM05D002646 ORTHO05D002782 2.1e-36 157.1 82 98.8
Solyc07g025230.2 Solanum lycopersicum HOM05D002646 ORTHO05D002782 1.5e-34 151.0 79 98.7
Nitab4.5_0004768g0020 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.7e-30 137.5 79 89.9
Nitab4.5_0000017g0180 Nicotiana tabacum HOM05D002646 ORTHO05D002782 5.1e-30 136.0 79 88.6
Peaxi162Scf00258g00024 Petunia axillaris HOM05D002646 ORTHO05D002782 4.3e-29 132.9 82 84.1
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.1e-28 130.6 80 83.8
CAN.G424.59 Capsicum annuum HOM05D002646 ORTHO05D002782 2.4e-27 127.1 82 81.7
QL02p008978 Quercus lobata HOM05D002646 ORTHO05D002782 2.1e-23 114.0 81 70.4
Atru.chr13.450 Acer truncatum HOM05D002646 ORTHO05D002782 6.6e-22 109.0 80 70.0
MD11G1162400 Malus domestica HOM05D002646 ORTHO05D002782 1.9e-21 107.5 81 67.9
Oeu007022.1 Olea europaea HOM05D002646 ORTHO05D002782 8.1e-20 102.1 71 71.8
SGA_v2.0_scaffold201G41411 Striga asiatica HOM05D002646 ORTHO05D002782 8.1e-20 102.1 71 71.8
Potri.005G228200 Populus trichocarpa HOM05D002646 ORTHO05D002782 1.4e-19 101.3 79 67.1
CSS0007142 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.8e-19 100.9 80 62.5
Lj4A37G90 Lonicera japonica HOM05D002646 ORTHO05D002782 1.8e-19 100.9 82 62.2
TWI36G1083 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 1.8e-19 100.9 79 68.4
CSS0033317 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 2.4e-19 100.5 82 62.2
CSS0043279 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 2.4e-19 100.5 82 62.2
Manes.05G158200 Manihot esculenta HOM05D002646 ORTHO05D002782 4.0e-19 99.8 77 66.2
vmacro21650 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 4.0e-19 99.8 82 63.4
Rhsim06G0032100 Rhododendron simsii HOM05D002646 ORTHO05D002782 5.3e-19 99.4 92 60.9
Sabra05G0176100 Salix brachista HOM05D002646 ORTHO05D002782 5.3e-19 99.4 79 65.8
Oeu063762.1 Olea europaea HOM05D002646 ORTHO05D002782 9.0e-19 98.6 71 66.2
CSS0011651 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.2e-18 98.2 80 61.2
COL.COLO4_26294 Corchorus olitorius HOM05D002646 ORTHO05D002782 1.2e-18 98.2 85 63.5
MSTRG.25182 Avicennia marina HOM05D002646 ORTHO05D002782 2.0e-18 97.4 72 68.1
Cfa018170 Carpinus fangiana HOM05D002646 ORTHO05D002782 2.6e-18 97.1 85 58.8
DCAR_019536 Daucus carota HOM05D002646 ORTHO05D002782 2.6e-18 97.1 80 63.8
Thecc.08G028900 Theobroma cacao HOM05D002646 ORTHO05D002782 3.4e-18 96.7 77 63.6
Actinidia15339 Actinidia chinensis HOM05D002646 ORTHO05D002782 4.5e-18 96.3 88 62.5
Gohir.A06G009600 Gossypium hirsutum HOM05D002646 ORTHO05D002782 4.5e-18 96.3 78 60.3
Gohir.D06G005550 Gossypium hirsutum HOM05D002646 ORTHO05D002782 5.8e-18 95.9 78 61.5
Gorai.010G009700 Gossypium raimondii HOM05D002646 ORTHO05D002782 5.8e-18 95.9 78 61.5
Lsat_1_v5_gn_5_28001 Lactuca sativa HOM05D002646 ORTHO05D002782 5.8e-18 95.9 80 57.5
Nn7g35815 Nelumbo nucifera HOM05D002646 ORTHO05D002782 5.8e-18 95.9 72 69.4
DCAR_006185 Daucus carota HOM05D002646 ORTHO05D002782 9.9e-18 95.1 80 61.2
Hund06823 Selenicereus undatus HOM05D002646 ORTHO05D002782 2.2e-17 94.0 73 64.4
Sc02g0005990 Simmondsia chinensis HOM05D002646 ORTHO05D002782 3.8e-17 93.2 85 58.8
Dinv39431 Davidia involucrata HOM05D002646 ORTHO05D002782 4.9e-17 92.8 76 61.8
Eucgr.F01577 Eucalyptus grandis HOM05D002646 ORTHO05D002782 4.9e-17 92.8 79 57.0
SHI08146 Sapria himalayana HOM05D002646 ORTHO05D002782 8.4e-17 92.0 79 58.2
MELO3C010957.2 Cucumis melo HOM05D002646 ORTHO05D002782 1.1e-16 91.7 77 59.7
HanXRQChr03g0069631 Helianthus annuus HOM05D002646 ORTHO05D002782 1.1e-16 91.7 77 62.3
PGR083G1089 Punica granatum HOM05D002646 ORTHO05D002782 1.4e-16 91.3 81 61.7
GSVIVG01009725001 Vitis vinifera HOM05D002646 ORTHO05D002782 3.2e-16 90.1 66 66.7
CsaV3_2G028870 Cucumis sativus L. HOM05D002646 ORTHO05D002782 5.5e-16 89.4 77 55.8
CANSAT25G1404 Cannabis sativa HOM05D002646 ORTHO05D002782 7.1e-16 89.0 73 60.3
Ca_13365_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 7.1e-16 89.0 77 57.1
Migut.C00748 Erythranthe guttata HOM05D002646 ORTHO05D002782 7.1e-16 89.0 71 62.0
AUR62025546 Chenopodium quinoa HOM05D002646 ORTHO05D002782 1.6e-15 87.8 73 63.0
AUR62043098 Chenopodium quinoa HOM05D002646 ORTHO05D002782 1.6e-15 87.8 73 61.6
Ciclev10000434m.g Citrus clementina HOM05D002646 ORTHO05D002782 1.6e-15 87.8 69 63.8
FAN02G0761 Fragaria x ananassa HOM05D002646 ORTHO05D002782 2.1e-15 87.4 82 59.8
EL10Ac4g08951 Beta vulgaris HOM05D002646 ORTHO05D002782 2.7e-15 87.0 73 61.6
Duzib041G0261 Durio zibethinus HOM05D002646 ORTHO05D002782 2.7e-15 87.0 65 67.7
ATR0568G218 Amborella trichopoda HOM05D002646 ORTHO05D002782 3.5e-15 86.7 82 52.4
CiPaw.16G059900 Carya illinoinensis HOM05D002646 ORTHO05D002782 3.5e-15 86.7 67 67.2
arahy.Tifrunner.gnm1.ann1.GFJ2Z4 Arachis hypogaea HOM05D002646 ORTHO05D002782 4.6e-15 86.3 68 61.8
arahy.Tifrunner.gnm1.ann1.RWN5MT Arachis hypogaea HOM05D002646 ORTHO05D002782 4.6e-15 86.3 68 61.8
MD03G1139500 Malus domestica HOM05D002646 ORTHO05D002782 6.0e-15 85.9 67 67.2
CDE05G0187 Ceratophyllum demersum HOM05D002646 ORTHO05D002782 7.9e-15 85.5 82 52.4
MBI17_g36957_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 7.9e-15 85.5 82 52.4
FAN05G0303 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.0e-14 85.1 82 58.5
MBI16_g07737_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 1.0e-14 85.1 78 53.8
RcHm_v2.0_Chr7g0207751 Rosa chinensis HOM05D002646 ORTHO05D002782 1.0e-14 85.1 63 68.3
Sed0008809 Sechium edule HOM05D002646 ORTHO05D002782 1.0e-14 85.1 71 60.6
ECA246G2606 Erigeron canadensis HOM05D002646 ORTHO05D002782 1.8e-14 84.3 71 60.6
FvH4_6g24430 Fragaria vesca HOM05D002646 ORTHO05D002782 1.8e-14 84.3 82 57.3
Dinv36096 Davidia involucrata HOM05D002646 ORTHO05D002782 3.0e-14 83.6 63 65.1
FAN14G1091 Fragaria x ananassa HOM05D002646 ORTHO05D002782 3.0e-14 83.6 82 57.3
FAN09G1605 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.7e-14 82.4 74 59.5
Haze_17945 Corylus avellana HOM05D002646 ORTHO05D002782 1.5e-13 81.3 68 60.3
Aqoxy2G03652 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 5.6e-13 79.3 78 52.6
Cc10_g02720 Coffea canephora HOM05D002646 ORTHO05D002782 1.6e-12 77.8 68 55.9
Medtr1g022360 Medicago truncatula HOM05D002646 ORTHO05D002782 4.8e-12 76.3 72 52.8
THA.LOC104813824 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 4.8e-12 76.3 82 48.8
Lalb_Chr14g0369361 Lupinus albus HOM05D002646 ORTHO05D002782 1.1e-11 75.1 62 58.1
Nitab4.5_0000624g0070 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.1e-11 75.1 61 67.2
Ah.10g033130 Amaranthus hybridus HOM05D002646 ORTHO05D002782 1.8e-11 74.3 69 52.2
MBI17_g19091_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 1.8e-11 74.3 80 46.2
SEGI_28365 Sequoiadendron giganteum HOM05D002646 ORTHO05D002782 2.4e-11 73.9 80 43.8
Lj5g0008895 Lotus japonicus HOM05D002646 ORTHO05D002782 3.1e-11 73.6 77 49.4
PSO675G2317 Papaver somniferum HOM05D002646 ORTHO05D002782 3.1e-11 73.6 77 51.9
TPR.G20158 Trifolium pratense HOM05D002646 ORTHO05D002782 4.0e-11 73.2 77 48.1
VMungo0647G1092 Vigna mungo HOM05D002646 ORTHO05D002782 4.0e-11 73.2 68 57.4
BcaB07g31981 Brassica carinata HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
BcaC05g25840 Brassica carinata HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
A06p15700 Brassica napus HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
C05p18020 Brassica napus HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
BolC5t30509H Brassica oleracea HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
BraA06t24679Z Brassica rapa HOM05D002646 ORTHO05D002782 6.9e-11 72.4 73 50.7
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 9.0e-11 72.0 60 60.0
Thhalv10006936m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 1.2e-10 71.6 73 52.1
PSO017G2345 Papaver somniferum HOM05D002646 ORTHO05D002782 1.5e-10 71.2 77 49.4
Phvul.001G013700 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 1.5e-10 71.2 68 57.4
Glyma.14G073700 Glycine max HOM05D002646 ORTHO05D002782 2.6e-10 70.5 60 58.3
Glyma.17G251300 Glycine max HOM05D002646 ORTHO05D002782 3.4e-10 70.1 60 60.0
Psat6g008080 Pisum sativum HOM05D002646 ORTHO05D002782 3.4e-10 70.1 72 50.0
Carub.0001s1909 Capsella rubella HOM05D002646 ORTHO05D002782 5.8e-10 69.3 70 50.0
AL1G32270 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 1.0e-09 68.6 69 47.8
Peaxi162Scf00303g00042 Petunia axillaris HOM05D002646 ORTHO05D002782 1.0e-09 68.6 36 91.7
HPP92_021824 Vanilla planifolia HOM05D002646 ORTHO05D002782 1.3e-09 68.2 81 45.7
AT1G19520 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 1.7e-09 67.8 69 47.8
Sp1g17390 Schrenkiella parvula HOM05D002646 ORTHO05D002782 1.7e-09 67.8 73 47.9
CARHR020090 Cardamine hirsuta HOM05D002646 ORTHO05D002782 4.9e-09 66.2 70 48.6
ClCG08G014890 Citrullus lanatus HOM05D002646 ORTHO05D002782 4.9e-09 66.2 50 66.0
PGSC0003DMG400014782 Solanum tuberosum HOM05D002646 ORTHO05D002782 4.9e-09 66.2 39 87.2
Prupe.6G124500 Prunus persica HOM05D002646 ORTHO05D002782 9.3e-08 62.0 56 58.9
Zm00001eb246850 Zea mays HOM05D002646 ORTHO05D002782 1.8e-06 57.8 69 39.1
Potri.002G034900 Populus trichocarpa HOM05D002646 ORTHO05D002782 6.7e-06 55.8 35 68.6


User provided reference genes

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