Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g021440.1 Solanum lycopersicum HOM05D000001 ORTHO05D009995 8.9e-34 146.4 74 100.0
Solyc06g009800.3 Solanum lycopersicum HOM05D000001 ORTHO05D009995 6.4e-24 113.6 64 89.1
Sopen06g004430 Solanum pennellii HOM05D000001 ORTHO05D009995 6.4e-24 113.6 64 89.1
Sopen07g010530 Solanum pennellii HOM05D000004 ORTHO05D000002 6.4e-24 113.6 64 89.1
Sopen12g026150 Solanum pennellii HOM05D000001 ORTHO05D009995 2.4e-23 111.7 64 87.5
Solyc12g062720.3 Solanum lycopersicum HOM05D000001 ORTHO05D009995 2.1e-22 108.6 64 85.9
PGSC0003DMG400019958 Solanum tuberosum HOM05D000001 ORTHO05D009995 8.7e-21 103.2 64 79.7
Nitab4.5_0000641g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009995 1.5e-17 92.4 64 70.3
Nitab4.5_0006147g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009995 7.6e-17 90.1 64 68.8
Peaxi162Scf01256g00011 Petunia axillaris HOM05D000001 ORTHO05D009995 7.1e-15 83.6 64 64.1
Migut.D01822 Erythranthe guttata HOM05D000001 ORTHO05D009995 1.2e-14 82.8 64 62.5
SalBow7G2994 Salvia bowleyana HOM05D000001 ORTHO05D009995 1.6e-14 82.4 64 62.5
CAN.G74.10 Capsicum annuum HOM05D000001 ORTHO05D009995 2.7e-14 81.6 65 69.2
GSVIVG01008007001 Vitis vinifera HOM05D000001 ORTHO05D009995 2.7e-14 81.6 64 54.7
COL.COLO4_28317 Corchorus olitorius HOM05D000001 ORTHO05D009995 2.3e-13 78.6 64 57.8
Thecc.03G086200 Theobroma cacao HOM05D000001 ORTHO05D009995 3.0e-13 78.2 64 56.2
Cc04_g16650 Coffea canephora HOM05D000001 ORTHO05D009995 1.9e-12 75.5 63 54.0
Prupe.5G193000 Prunus persica HOM05D000001 ORTHO05D009995 2.5e-12 75.1 64 53.1
TWI81G0143 Tripterygium wilfordii HOM05D000001 ORTHO05D009995 3.3e-12 74.7 64 54.7
Aa31LG4G4860 Aethionema arabicum HOM05D000001 ORTHO05D009995 4.3e-12 74.3 60 56.7
Dinv38706 Davidia involucrata HOM05D000001 ORTHO05D009995 5.6e-12 73.9 64 53.1
SGA_v2.0_scaffold7G04066 Striga asiatica HOM05D000001 ORTHO05D009995 5.6e-12 73.9 64 54.7
Duzib205G0661 Durio zibethinus HOM05D000001 ORTHO05D009995 7.4e-12 73.6 64 56.2
THA.LOC104812551 Tarenaya hassleriana HOM05D000001 ORTHO05D009995 9.6e-12 73.2 62 51.6
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 2.1e-11 72.0 57 56.1
AT1G74630 Arabidopsis thaliana HOM05D000001 ORTHO05D009995 2.1e-11 72.0 57 56.1
Cpa.g.sc111.4 Carica papaya HOM05D000001 ORTHO05D009995 2.1e-11 72.0 64 50.0
Sc09g0000830 Simmondsia chinensis HOM05D000001 ORTHO05D009995 2.8e-11 71.6 65 56.9
Gorai.003G097100 Gossypium raimondii HOM05D000001 ORTHO05D009995 3.7e-11 71.2 62 51.6
Nn6g31862 Nelumbo nucifera HOM05D000001 ORTHO05D009995 3.7e-11 71.2 64 50.0
Lalb_Chr13g0303271 Lupinus albus HOM05D000001 ORTHO05D009995 6.2e-11 70.5 70 50.0
Cfa018910 Carpinus fangiana HOM05D000001 ORTHO05D009995 8.1e-11 70.1 61 49.2
Hma1.2p1_0060F.1_g033110 Hydrangea macrophylla HOM05D000001 ORTHO05D009995 1.1e-10 69.7 64 54.7
BcaC03g15515 Brassica carinata HOM05D000001 ORTHO05D009995 1.4e-10 69.3 57 52.6
A02p19450 Brassica napus HOM05D000001 ORTHO05D009995 1.4e-10 69.3 57 52.6
BolC2t09232H Brassica oleracea HOM05D000001 ORTHO05D009995 1.4e-10 69.3 57 52.6
QL11p020657 Quercus lobata HOM05D000001 ORTHO05D009995 1.8e-10 68.9 61 50.8
Sabra05G0036400 Salix brachista HOM05D000001 ORTHO05D009995 1.8e-10 68.9 64 53.1
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 3.1e-10 68.2 64 51.6
ClCG04G012290 Citrullus lanatus HOM05D000001 ORTHO05D009995 3.1e-10 68.2 64 48.4
Haze_07294 Corylus avellana HOM05D000001 ORTHO05D009995 4.0e-10 67.8 61 49.2
FvH4_5g14980 Fragaria vesca HOM05D000001 ORTHO05D009995 4.0e-10 67.8 64 50.0
C02p31980 Brassica napus HOM05D000001 ORTHO05D009995 5.3e-10 67.4 57 50.9
CiPaw.12G013800 Carya illinoinensis HOM05D000001 ORTHO05D009995 5.3e-10 67.4 61 52.5
Lj4g0020036 Lotus japonicus HOM05D000001 ORTHO05D009995 5.3e-10 67.4 64 53.1
Thhalv10018254m.g Eutrema salsugineum HOM05D000001 ORTHO05D009995 6.9e-10 67.0 64 48.4
MBI02_g41661_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009995 6.9e-10 67.0 64 53.1
BraA02t06984Z Brassica rapa HOM05D000001 ORTHO05D009995 9.0e-10 66.6 57 49.1
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 9.0e-10 66.6 59 50.8
RcHm_v2.0_Chr7g0181341 Rosa chinensis HOM05D000001 ORTHO05D009995 9.0e-10 66.6 65 50.8
Sed0026705 Sechium edule HOM05D000001 ORTHO05D009995 9.0e-10 66.6 71 42.3
Potri.005G035900 Populus trichocarpa HOM05D000001 ORTHO05D009995 1.2e-09 66.2 64 53.1
FAN04G1714 Fragaria x ananassa HOM05D000001 ORTHO05D009995 1.5e-09 65.9 64 48.4
CsaV3_1G005460 Cucumis sativus L. HOM05D000001 ORTHO05D009995 2.0e-09 65.5 64 46.9
Aqoxy3G03377 Aquilegia oxysepala HOM05D000001 ORTHO05D009995 3.4e-09 64.7 65 50.8
MD14G1199700 Malus domestica HOM05D000001 ORTHO05D009995 3.4e-09 64.7 57 52.6
Manes.06G093000 Manihot esculenta HOM05D000001 ORTHO05D009995 4.5e-09 64.3 62 46.8
CARHR067930 Cardamine hirsuta HOM05D000001 ORTHO05D009995 5.8e-09 63.9 60 48.3
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 5.8e-09 63.9 65 50.8
HanXRQChr16g0505001 Helianthus annuus HOM05D000001 ORTHO05D009995 5.8e-09 63.9 62 53.2
TPR.G9265 Trifolium pratense HOM05D000001 ORTHO05D009995 5.8e-09 63.9 65 49.2
VMungo1215G2427 Vigna mungo HOM05D000001 ORTHO05D009995 5.8e-09 63.9 64 48.4
BcaB05g24861 Brassica carinata HOM05D000001 ORTHO05D009995 7.6e-09 63.5 65 44.6
MELO3C001979.2 Cucumis melo HOM05D000001 ORTHO05D009995 7.6e-09 63.5 64 43.8
PGR044G0849 Punica granatum HOM05D000001 ORTHO05D009995 2.9e-08 61.6 61 52.5
HPP92_015949 Vanilla planifolia HOM05D000001 ORTHO05D009995 3.8e-08 61.2 61 44.3
HPP92_015960 Vanilla planifolia HOM05D000001 ORTHO05D009995 3.8e-08 61.2 61 44.3
Medtr0493s0010 Medicago truncatula HOM05D000001 ORTHO05D009995 4.9e-08 60.8 65 47.7
Medtr4g108660 Medicago truncatula HOM05D000001 ORTHO05D009995 4.9e-08 60.8 65 47.7
Psat4g051400 Pisum sativum HOM05D000001 ORTHO05D009995 1.4e-07 59.3 65 46.2
ATR0564G044 Amborella trichopoda HOM05D000001 ORTHO05D015837 2.5e-07 58.5 62 46.8
Hma1.2p1_0750F.1_g212690 Hydrangea macrophylla HOM05D000001 ORTHO05D009664 7.9e-06 53.5 64 40.6


User provided reference genes

Program Settings