Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 0.0e+00 2061.6 1013 100.0
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 0.0e+00 1958.7 1030 95.2
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 0.0e+00 1791.9 1045 87.0
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 0.0e+00 1719.9 1030 85.6
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 0.0e+00 1592.0 804 98.1
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 0.0e+00 1526.5 1053 75.4
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 0.0e+00 1387.9 1139 66.5
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 0.0e+00 1385.2 1062 70.1
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 0.0e+00 1355.1 1052 68.1
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 1.5e-224 783.9 1109 42.6
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.1e-214 751.1 1091 41.0
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.0e-212 743.0 1079 41.4
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 2.2e-207 726.9 1090 40.4
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 6.8e-201 705.3 1098 40.8
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 9.2e-198 694.9 1079 39.8
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 3.3e-195 686.4 1064 40.7
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 9.6e-195 684.9 1109 39.1
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.5e-192 677.6 1092 39.6
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 7.1e-190 668.7 1093 39.0
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 1.2e-189 667.9 1087 39.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 3.1e-185 653.3 1111 38.1
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.4e-184 649.8 1057 39.4
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 1.7e-183 647.5 1073 39.0
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 1.9e-182 644.0 1104 37.9
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 3.3e-179 633.3 1083 39.1
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 4.9e-175 619.4 1100 37.5
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 6.7e-172 609.0 1082 37.7
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 3.3e-171 606.7 1129 36.5
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 4.3e-171 606.3 1091 37.1
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 7.4e-171 605.5 1091 37.9
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 6.2e-170 602.4 1099 37.0
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 1.3e-167 594.7 1100 36.8
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-165 587.4 1099 36.6
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.3e-164 583.9 1065 36.4
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 4.8e-162 576.2 1046 36.4
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 5.3e-161 572.8 1075 35.6
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.2e-160 571.6 1084 36.7
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 4.5e-160 569.7 1105 36.6
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 5.0e-159 566.2 1078 34.7
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 8.5e-159 565.5 1099 34.9
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-158 564.7 1124 35.9
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 5.5e-158 562.8 1053 35.6
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.3e-156 558.1 1086 34.5
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.6e-154 551.2 1131 36.2
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.4e-153 547.4 1110 33.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 1.2e-152 545.0 1081 35.1
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 1.8e-148 531.2 1038 35.9
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 5.1e-148 529.6 1105 34.3
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 8.8e-148 528.9 1039 35.5
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.1e-147 528.5 1095 34.7
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.5e-147 528.1 1099 33.9
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 6.3e-146 522.7 1127 33.6
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.0e-143 515.4 1041 35.0
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 9.4e-142 508.8 1095 33.2
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 2.1e-141 507.7 1104 34.9
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.7e-141 507.3 1083 35.4
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 7.4e-139 499.2 1044 33.5
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 3.6e-133 480.3 1106 33.0
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.0e-132 478.8 1098 34.1
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 4.0e-132 476.9 1073 34.0
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 5.2e-132 476.5 882 35.0
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 7.7e-128 462.6 1037 34.2
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 2.9e-127 460.7 1035 33.4
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 2.9e-127 460.7 1035 33.4
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 2.5e-126 457.6 1071 33.7
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 4.2e-126 456.8 1040 33.3
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 4.2e-126 456.8 1042 33.9
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.6e-125 454.9 1039 33.3
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 6.1e-125 453.0 1078 33.7
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 8.0e-125 452.6 916 35.2
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 5.7e-123 446.4 1040 34.3
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 1.1e-121 442.2 1077 31.9
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 3.5e-120 437.2 1060 32.4
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 4.2e-118 430.3 389 56.0
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 3.6e-117 427.2 1071 31.9
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 2.0e-115 421.4 1172 30.2
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 7.0e-113 412.9 1035 31.4
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.8e-105 388.3 736 35.5
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 2.1e-101 374.8 1119 30.1
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 2.3e-100 371.3 1027 29.7
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 6.2e-93 346.7 731 33.7
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.5e-86 325.5 1069 28.3
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 2.8e-85 321.2 456 40.6
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 4.4e-75 287.3 414 42.5
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.4e-75 287.3 437 38.4
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.9e-75 286.2 340 46.8
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 9.3e-73 279.6 721 32.5
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.0e-71 274.6 724 30.0
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 5.6e-70 270.4 522 34.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 1.6e-69 268.9 684 30.7
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 2.1e-69 268.5 606 32.7
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.7e-66 258.8 644 31.1
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 5.4e-65 253.8 456 36.8
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-62 245.7 353 42.5
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.0e-60 237.7 611 31.8
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.5e-59 234.2 373 38.6
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 5.8e-59 233.8 463 35.2
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.0e-55 221.5 256 45.7
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.9e-54 218.8 343 39.4
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-48 199.1 233 45.1
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.6e-45 189.1 369 37.1
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.5e-41 175.3 421 30.4
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 9.3e-41 173.3 324 35.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.1e-40 172.2 379 32.2
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.8e-37 161.8 122 67.2
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.4e-36 158.7 192 43.8
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 8.5e-34 150.2 361 28.5
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 7.7e-27 127.1 287 29.3
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 8.0e-24 117.1 410 28.3
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 9.7e-22 110.2 275 30.2
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.8e-20 105.9 172 34.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 2.9e-18 98.6 393 27.5
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.1e-17 96.7 457 24.7
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 4.0e-15 88.2 74 60.8
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 3.5e-11 75.1 51 70.6
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 8.0e-08 63.9 161 26.7


User provided reference genes

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