Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g020900.1 Solanum lycopersicum HOM05D000046 ORTHO05D011339 1.5e-45 185.7 85 100.0
Solyc08g016340.1 Solanum lycopersicum HOM05D000046 ORTHO05D011339 1.4e-19 99.4 60 73.3
Sopen08g006700 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-13 79.3 48 79.2
Solyc03g032150.3 Solanum lycopersicum HOM05D000046 ORTHO05D000195 2.5e-11 72.0 54 64.8
Sopen03g006000 Solanum pennellii HOM05D000046 ORTHO05D000195 2.5e-11 72.0 54 64.8
CAN.G354.17 Capsicum annuum HOM05D000046 ORTHO05D000195 5.5e-11 70.9 54 63.0
Nitab4.5_0000495g0140 Nicotiana tabacum HOM05D000046 ORTHO05D000195 1.2e-10 69.7 54 63.0
PGSC0003DMG400018672 Solanum tuberosum HOM05D000046 ORTHO05D000195 1.6e-10 69.3 54 63.0
CAN.G328.17 Capsicum annuum HOM05D000046 ORTHO05D000195 2.1e-10 68.9 54 59.3
Nitab4.5_0000467g0030 Nicotiana tabacum HOM05D000046 ORTHO05D000195 2.7e-10 68.6 54 59.3
Nitab4.5_0005297g0050 Nicotiana tabacum HOM05D000046 ORTHO05D000195 3.6e-10 68.2 76 48.7
Medtr8g073560 Medicago truncatula HOM05D000046 ORTHO05D000195 4.6e-10 67.8 53 60.4
Peaxi162Scf00442g00314 Petunia axillaris HOM05D000046 ORTHO05D000195 4.6e-10 67.8 54 61.1
PGSC0003DMG400017479 Solanum tuberosum HOM05D000046 ORTHO05D000195 7.9e-10 67.0 54 57.4
Nitab4.5_0002850g0050 Nicotiana tabacum HOM05D000046 ORTHO05D000195 1.0e-09 66.6 54 57.4
Solyc02g038817.1 Solanum lycopersicum HOM05D000046 ORTHO05D000195 1.0e-09 66.6 54 57.4
Sopen02g012610 Solanum pennellii HOM05D000046 ORTHO05D000195 1.0e-09 66.6 54 57.4
arahy.Tifrunner.gnm1.ann1.BSR962 Arachis hypogaea HOM05D000046 ORTHO05D000195 1.8e-09 65.9 53 58.5
arahy.Tifrunner.gnm1.ann1.CZ3U7F Arachis hypogaea HOM05D000046 ORTHO05D000195 1.8e-09 65.9 53 58.5
Oeu012545.1 Olea europaea HOM05D000046 ORTHO05D001269 1.8e-09 65.9 57 54.4
TWI73G1222 Tripterygium wilfordii HOM05D000046 ORTHO05D000195 1.8e-09 65.9 54 57.4
Phvul.002G115800 Phaseolus vulgaris HOM05D000046 ORTHO05D000195 2.3e-09 65.5 56 55.4
Glyma.09G198700 Glycine max HOM05D000046 ORTHO05D000195 3.0e-09 65.1 53 58.5
CSS0042264 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D000195 3.9e-09 64.7 54 57.4
SalBow3G2264 Salvia bowleyana HOM05D000046 ORTHO05D000195 3.9e-09 64.7 53 56.6
SalBow3G3395 Salvia bowleyana HOM05D000046 ORTHO05D000195 3.9e-09 64.7 53 56.6
Thecc.01G006100 Theobroma cacao HOM05D000046 ORTHO05D000195 3.9e-09 64.7 54 57.4
COL.COLO4_22548 Corchorus olitorius HOM05D000046 ORTHO05D000195 5.1e-09 64.3 54 57.4
Glyma.16G117200 Glycine max HOM05D000046 ORTHO05D000195 6.7e-09 63.9 53 56.6
SalBow5G1827 Salvia bowleyana HOM05D000046 ORTHO05D000195 6.7e-09 63.9 54 55.6
MSTRG.3627 Avicennia marina HOM05D000046 ORTHO05D000195 8.8e-09 63.5 54 53.7
Zm00001eb128790 Zea mays HOM05D000046 ORTHO05D000195 1.1e-08 63.2 42 66.7
Lj4g0001841 Lotus japonicus HOM05D000046 ORTHO05D000195 1.5e-08 62.8 42 66.7
Lalb_Chr16g0391611 Lupinus albus HOM05D000046 ORTHO05D000195 1.5e-08 62.8 53 54.7
Oeu004301.2 Olea europaea HOM05D000046 ORTHO05D000195 1.5e-08 62.8 59 50.8
Psat4g104400 Pisum sativum HOM05D000046 ORTHO05D000195 1.5e-08 62.8 54 57.4
Actinidia28745 Actinidia chinensis HOM05D000046 ORTHO05D000195 1.9e-08 62.4 54 55.6
Glyma.11G085300 Glycine max HOM05D000046 ORTHO05D000195 1.9e-08 62.4 56 53.6
VMungo0251G0301 Vigna mungo HOM05D000046 ORTHO05D000195 1.9e-08 62.4 53 54.7
Zm00001eb209350 Zea mays HOM05D000046 ORTHO05D000195 1.9e-08 62.4 42 64.3
Duzib187G1965 Durio zibethinus HOM05D000046 ORTHO05D000195 2.5e-08 62.0 54 55.6
FAN28G2927 Fragaria x ananassa HOM05D000046 ORTHO05D000195 2.5e-08 62.0 54 53.7
MD15G1232600 Malus domestica HOM05D000046 ORTHO05D000195 2.5e-08 62.0 54 51.9
Peaxi162Scf00580g00036 Petunia axillaris HOM05D000046 ORTHO05D000195 2.5e-08 62.0 54 53.7
vmacro18461 Vaccinium macrocarpon HOM05D000046 ORTHO05D000195 2.5e-08 62.0 39 71.8
CANSAT25G0035 Cannabis sativa HOM05D000046 ORTHO05D000195 3.3e-08 61.6 54 53.7
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 3.3e-08 61.6 54 53.7
HanXRQChr12g0382831 Helianthus annuus HOM05D000046 ORTHO05D011339 3.3e-08 61.6 61 47.5
Hma1.2p1_0085F.1_g044740 Hydrangea macrophylla HOM05D000046 ORTHO05D000195 3.3e-08 61.6 54 53.7
Lj2A498T34 Lonicera japonica HOM05D000046 ORTHO05D000195 3.3e-08 61.6 39 71.8
Phvul.003G269700 Phaseolus vulgaris HOM05D000046 ORTHO05D000195 3.3e-08 61.6 53 54.7
QL06p052869 Quercus lobata HOM05D000046 ORTHO05D000195 3.3e-08 61.6 54 53.7
Hund19703 Selenicereus undatus HOM05D000046 ORTHO05D000195 3.3e-08 61.6 39 66.7
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 3.3e-08 61.6 39 66.7
Haze_03666 Corylus avellana HOM05D000046 ORTHO05D000195 4.3e-08 61.2 42 64.3
FAN23G1558 Fragaria x ananassa HOM05D000046 ORTHO05D000195 4.3e-08 61.2 54 53.7
HanXRQChr12g0383001 Helianthus annuus HOM05D000046 ORTHO05D000195 4.3e-08 61.2 53 52.8
HanXRQChr12g0383111 Helianthus annuus HOM05D000046 ORTHO05D011339 4.3e-08 61.2 53 52.8
Oeu021988.1 Olea europaea HOM05D000046 ORTHO05D000195 4.3e-08 61.2 54 51.9
FvH4_1g10470 Fragaria vesca HOM05D000046 ORTHO05D000195 5.7e-08 60.8 54 51.9
FAN19G2939 Fragaria x ananassa HOM05D000046 ORTHO05D000195 5.7e-08 60.8 54 51.9
Lsat_1_v5_gn_8_112220 Lactuca sativa HOM05D000046 ORTHO05D000195 5.7e-08 60.8 54 50.0
MD02G1117900 Malus domestica HOM05D000046 ORTHO05D000195 5.7e-08 60.8 54 51.9
Os02g0118200 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000195 5.7e-08 60.8 42 61.9
RcHm_v2.0_Chr2g0097331 Rosa chinensis HOM05D000046 ORTHO05D000195 5.7e-08 60.8 54 53.7
Zm00001eb230110 Zea mays HOM05D000046 ORTHO05D000195 5.7e-08 60.8 42 61.9
Zm00001eb306150 Zea mays HOM05D000046 ORTHO05D001269 5.7e-08 60.8 42 61.9
Cc07_g11760 Coffea canephora HOM05D000046 ORTHO05D000195 7.4e-08 60.5 54 53.7
FAN26G2115 Fragaria x ananassa HOM05D000046 ORTHO05D000195 7.4e-08 60.5 54 51.9
HanXRQChr09g0259451 Helianthus annuus HOM05D000046 ORTHO05D000195 7.4e-08 60.5 53 52.8
Cpa.g.sc6.345 Carica papaya HOM05D000046 ORTHO05D000195 9.7e-08 60.1 59 47.5
Cfa007074 Carpinus fangiana HOM05D000046 ORTHO05D000195 9.7e-08 60.1 39 64.1
HPP92_001735 Vanilla planifolia HOM05D000046 ORTHO05D000195 1.3e-07 59.7 54 51.9
Zm00001eb268700 Zea mays HOM05D000046 ORTHO05D001269 1.3e-07 59.7 53 52.8
CiPaw.07G003500 Carya illinoinensis HOM05D000046 ORTHO05D000195 1.7e-07 59.3 39 69.2
ClCG10G000230 Citrullus lanatus HOM05D000046 ORTHO05D000195 2.2e-07 58.9 39 64.1
MELO3C013720.2 Cucumis melo HOM05D000046 ORTHO05D000195 2.2e-07 58.9 39 61.5
CsaV3_3G000250 Cucumis sativus L. HOM05D000046 ORTHO05D000195 2.2e-07 58.9 39 61.5
ECA240G4689 Erigeron canadensis HOM05D000046 ORTHO05D000195 2.2e-07 58.9 56 50.0
Glyma.11G085400 Glycine max HOM05D000046 ORTHO05D000195 2.2e-07 58.9 56 51.8
Nn6g31714 Nelumbo nucifera HOM05D000046 ORTHO05D000195 2.2e-07 58.9 54 48.1
Potri.007G062700 Populus trichocarpa HOM05D000046 ORTHO05D000195 2.2e-07 58.9 54 48.1
BcaNung03150 Brassica carinata HOM05D000046 ORTHO05D011339 2.8e-07 58.5 55 45.5
Glyma.16G117700 Glycine max HOM05D000046 ORTHO05D000195 2.8e-07 58.5 54 51.9
Prupe.7G181500 Prunus persica HOM05D000046 ORTHO05D000195 2.8e-07 58.5 54 50.0
PGR119G1023 Punica granatum HOM05D000046 ORTHO05D000195 2.8e-07 58.5 39 64.1
Sabra07G0052600 Salix brachista HOM05D000046 ORTHO05D000195 2.8e-07 58.5 54 48.1
Sed0028062 Sechium edule HOM05D000046 ORTHO05D000195 2.8e-07 58.5 39 64.1
Zm00001eb084460 Zea mays HOM05D000046 ORTHO05D011339 2.8e-07 58.5 40 62.5
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 4.8e-07 57.8 54 51.9
Aqoxy5G01023 Aquilegia oxysepala HOM05D000046 ORTHO05D011339 4.8e-07 57.8 54 50.0
Aqoxy5G01024 Aquilegia oxysepala HOM05D000046 ORTHO05D000195 4.8e-07 57.8 54 50.0
CSS0047710 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D000195 4.8e-07 57.8 54 50.0
DCAR_032347 Daucus carota HOM05D000046 ORTHO05D011339 4.8e-07 57.8 56 46.4
Duzib147G1075 Durio zibethinus HOM05D000046 ORTHO05D000195 4.8e-07 57.8 54 51.9
Manes.02G113800 Manihot esculenta HOM05D000046 ORTHO05D000195 4.8e-07 57.8 54 50.0
Potri.005G100900 Populus trichocarpa HOM05D000046 ORTHO05D000195 4.8e-07 57.8 54 50.0
HPP92_014558 Vanilla planifolia HOM05D000046 ORTHO05D000195 4.8e-07 57.8 59 44.1
VMungo1215G1445 Vigna mungo HOM05D000046 ORTHO05D000195 4.8e-07 57.8 56 48.2
arahy.Tifrunner.gnm1.ann1.27RA9F Arachis hypogaea HOM05D000046 ORTHO05D000195 6.3e-07 57.4 54 44.4
arahy.Tifrunner.gnm1.ann1.YSEA5L Arachis hypogaea HOM05D000046 ORTHO05D000195 6.3e-07 57.4 54 44.4
Eucgr.I02227 Eucalyptus grandis HOM05D000046 ORTHO05D000195 6.3e-07 57.4 39 61.5
Manes.01G155000 Manihot esculenta HOM05D000046 ORTHO05D000195 6.3e-07 57.4 39 56.4
Actinidia22903 Actinidia chinensis HOM05D000046 ORTHO05D000195 8.2e-07 57.0 53 50.9
DCAR_010125 Daucus carota HOM05D000046 ORTHO05D011339 8.2e-07 57.0 53 49.1
DCAR_010134 Daucus carota HOM05D000046 ORTHO05D011339 8.2e-07 57.0 53 49.1
Glyma.16G117400 Glycine max HOM05D000046 ORTHO05D213100 8.2e-07 57.0 39 64.1
Lj2g0003530 Lotus japonicus HOM05D000046 ORTHO05D000195 8.2e-07 57.0 42 59.5
Medtr8g073700 Medicago truncatula HOM05D000046 ORTHO05D000195 8.2e-07 57.0 53 50.9
Phvul.002G115900 Phaseolus vulgaris HOM05D000046 ORTHO05D000195 8.2e-07 57.0 56 50.0
GSVIVG01006157001 Vitis vinifera HOM05D000046 ORTHO05D011339 8.2e-07 57.0 57 49.1
EL10Ac9g21239 Beta vulgaris HOM05D000046 ORTHO05D000195 1.1e-06 56.6 54 50.0
BcaNung04340 Brassica carinata HOM05D000046 ORTHO05D000195 1.1e-06 56.6 42 54.8
A03p63700 Brassica napus HOM05D000046 ORTHO05D000195 1.1e-06 56.6 42 54.8
C07p61260 Brassica napus HOM05D000046 ORTHO05D000195 1.1e-06 56.6 42 54.8
BolC7t46552H Brassica oleracea HOM05D000046 ORTHO05D000195 1.1e-06 56.6 42 54.8
BraA03t15441Z Brassica rapa HOM05D000046 ORTHO05D000195 1.1e-06 56.6 42 54.8
Gohir.A02G177500 Gossypium hirsutum HOM05D000046 ORTHO05D000195 1.1e-06 56.6 39 64.1
Gohir.D03G002350 Gossypium hirsutum HOM05D000046 ORTHO05D002226 1.1e-06 56.6 39 64.1
Gorai.003G002600 Gossypium raimondii HOM05D000046 ORTHO05D002226 1.1e-06 56.6 39 64.1
GSVIVG01026650001 Vitis vinifera HOM05D000046 ORTHO05D000195 1.1e-06 56.6 54 51.9
Zm00001eb228590 Zea mays HOM05D000046 ORTHO05D000195 1.1e-06 56.6 39 59.0
MSTRG.15596 Avicennia marina HOM05D000046 ORTHO05D000195 1.4e-06 56.2 59 44.1
AUR62011717 Chenopodium quinoa HOM05D000046 ORTHO05D000195 1.4e-06 56.2 54 50.0
Ciclev10025699m.g Citrus clementina HOM05D000046 ORTHO05D000195 1.4e-06 56.2 39 64.1
MBI08_g26554_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.4e-06 56.2 54 46.3
Sabra05G0083400 Salix brachista HOM05D000046 ORTHO05D000195 1.4e-06 56.2 54 46.3
Solyc07g020880.1 Solanum lycopersicum HOM05D000046 ORTHO05D011339 1.4e-06 56.2 46 58.7
Zm00001eb429130 Zea mays HOM05D000046 ORTHO05D000195 1.4e-06 56.2 54 44.4
Aa31LG6G12570 Aethionema arabicum HOM05D000046 ORTHO05D000195 1.8e-06 55.8 39 59.0
Migut.L00767 Erythranthe guttata HOM05D000046 ORTHO05D000195 1.8e-06 55.8 39 64.1
PSO541G3607 Papaver somniferum HOM05D000046 ORTHO05D000195 1.8e-06 55.8 54 50.0
PSO675G5375 Papaver somniferum HOM05D000046 ORTHO05D000195 1.8e-06 55.8 54 50.0
Rhsim10G0197200 Rhododendron simsii HOM05D000046 ORTHO05D000195 1.8e-06 55.8 39 66.7
Sp7g33370 Schrenkiella parvula HOM05D000046 ORTHO05D000195 1.8e-06 55.8 39 59.0
HPP92_008377 Vanilla planifolia HOM05D000046 ORTHO05D000195 1.8e-06 55.8 59 42.4
Actinidia17372 Actinidia chinensis HOM05D000046 ORTHO05D000195 2.4e-06 55.5 53 49.1
CARHR243940 Cardamine hirsuta HOM05D000046 ORTHO05D000195 2.4e-06 55.5 42 57.1
Cc09_g10790 Coffea canephora HOM05D000046 ORTHO05D000195 2.4e-06 55.5 54 50.0
DCAR_010133 Daucus carota HOM05D000046 ORTHO05D011339 2.4e-06 55.5 56 44.6
Thhalv10025265m.g Eutrema salsugineum HOM05D000046 ORTHO05D000195 2.4e-06 55.5 39 59.0
VMungo1215G2878 Vigna mungo HOM05D000046 ORTHO05D000195 2.4e-06 55.5 56 48.2
Aqoxy6G01634 Aquilegia oxysepala HOM05D000046 ORTHO05D000195 3.1e-06 55.1 59 45.8
Cpa.g.sc20.220 Carica papaya HOM05D000046 ORTHO05D000195 3.1e-06 55.1 57 47.4
CiPaw.08G181300 Carya illinoinensis HOM05D000046 ORTHO05D000195 3.1e-06 55.1 39 61.5
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 3.1e-06 55.1 54 46.3
TAR381G0141 Trochodendron aralioides HOM05D000046 ORTHO05D002226 3.1e-06 55.1 54 46.3
Actinidia26332 Actinidia chinensis HOM05D000046 ORTHO05D000195 4.1e-06 54.7 57 45.6
Aqoxy2G00476 Aquilegia oxysepala HOM05D000046 ORTHO05D000195 4.1e-06 54.7 54 48.1
BcaNung05037 Brassica carinata HOM05D000046 ORTHO05D000195 4.1e-06 54.7 42 52.4
Os04g0563900 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000195 4.1e-06 54.7 42 50.0
Os06g0727400 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000195 4.1e-06 54.7 54 42.6
Atru.chr5.3541 Acer truncatum HOM05D000046 ORTHO05D000195 5.3e-06 54.3 56 46.4
Ah.01g023760 Amaranthus hybridus HOM05D000046 ORTHO05D000195 5.3e-06 54.3 54 48.1
Prupe.8G178900 Prunus persica HOM05D000046 ORTHO05D000195 5.3e-06 54.3 54 46.3
THA.LOC104804292 Tarenaya hassleriana HOM05D000046 ORTHO05D000195 5.3e-06 54.3 42 57.1
BcaB03g12418 Brassica carinata HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BcaC01g00506 Brassica carinata HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BcaNung00578 Brassica carinata HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BcaNung03644 Brassica carinata HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
A01p03030 Brassica napus HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
A08p21820 Brassica napus HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
C01p03380 Brassica napus HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
C03p80770 Brassica napus HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BolC1t00323H Brassica oleracea HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BolC3t20330H Brassica oleracea HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BraA01t00285Z Brassica rapa HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
BraA08t34135Z Brassica rapa HOM05D000046 ORTHO05D000195 6.9e-06 53.9 39 56.4
CDE08G1225 Ceratophyllum demersum HOM05D000046 ORTHO05D000195 6.9e-06 53.9 58 46.6
FvH4_1g14300 Fragaria vesca HOM05D000046 ORTHO05D000195 6.9e-06 53.9 43 53.5
FAN19G1073 Fragaria x ananassa HOM05D000046 ORTHO05D210271 6.9e-06 53.9 43 53.5
MBI05_g38249_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 6.9e-06 53.9 54 42.6
Oeu006379.1 Olea europaea HOM05D000046 ORTHO05D000195 6.9e-06 53.9 54 46.3
AUR62003381 Chenopodium quinoa HOM05D000046 ORTHO05D000195 9.1e-06 53.5 39 61.5
AUR62029447 Chenopodium quinoa HOM05D000046 ORTHO05D000195 9.1e-06 53.5 39 61.5
Ciclev10028539m.g Citrus clementina HOM05D000046 ORTHO05D000195 9.1e-06 53.5 54 46.3
Phvul.001G232300 Phaseolus vulgaris HOM05D000046 ORTHO05D000195 9.1e-06 53.5 39 53.8
vmacro20536 Vaccinium macrocarpon HOM05D000046 ORTHO05D000195 9.1e-06 53.5 39 64.1
Zm00001eb402520 Zea mays HOM05D000046 ORTHO05D000195 9.1e-06 53.5 39 56.4


User provided reference genes

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