Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 5.3e-194 681.0 389 100.0
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 5.3e-194 681.0 389 100.0
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 7.7e-177 624.0 390 93.6
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.7e-166 589.0 375 90.4
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 3.6e-166 588.6 385 83.1
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 8.8e-165 583.9 389 84.3
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 6.3e-163 577.8 386 81.9
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 9.4e-159 563.9 389 78.4
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.2e-158 563.5 388 77.6
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 4.4e-156 555.1 386 81.3
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 4.8e-155 551.6 381 77.7
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 8.3e-155 550.8 389 81.5
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.4e-154 550.1 386 82.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 9.1e-154 547.4 389 76.1
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.6e-153 546.6 386 80.1
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.0e-153 546.2 378 79.4
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 2.7e-153 545.8 389 77.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.5e-153 545.0 390 75.9
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 5.9e-153 544.7 388 79.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.0e-152 543.9 389 77.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.3e-152 542.7 389 78.9
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.9e-152 542.3 386 75.4
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 2.9e-152 542.3 389 79.2
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 5.0e-152 541.6 388 74.5
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.1e-151 540.4 390 79.2
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 2.5e-151 539.3 389 79.4
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 4.2e-151 538.5 391 76.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.2e-150 537.0 369 82.7
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.2e-150 537.0 389 76.6
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 2.1e-150 536.2 367 82.8
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.8e-150 535.8 370 79.7
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 6.1e-150 534.6 388 74.2
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.4e-149 533.5 367 79.0
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.4e-149 533.5 389 80.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 2.3e-149 532.7 388 75.0
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.0e-149 532.3 388 73.7
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.5e-148 530.0 365 77.8
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.0e-148 529.6 389 82.3
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.6e-148 529.3 388 74.5
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 3.4e-148 528.9 367 83.9
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 5.7e-148 528.1 391 76.0
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 7.5e-148 527.7 388 74.5
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.3e-147 526.9 366 78.7
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.2e-147 526.2 386 80.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.2e-147 526.2 391 78.5
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 3.7e-147 525.4 370 78.1
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.9e-147 525.0 367 77.9
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 4.9e-147 525.0 374 77.3
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.3e-147 524.6 391 78.3
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.1e-146 523.9 367 76.6
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.4e-146 523.5 389 77.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.4e-146 523.5 367 77.7
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.8e-146 523.1 368 77.2
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 3.2e-146 522.3 391 76.2
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.2e-146 522.3 367 80.7
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 5.4e-146 521.5 369 80.2
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 9.2e-146 520.8 367 81.7
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.6e-145 520.0 372 80.1
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.5e-145 518.8 495 61.2
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 5.9e-145 518.1 370 77.0
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.9e-144 515.4 378 79.4
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 3.9e-144 515.4 363 76.9
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 8.6e-144 514.2 368 76.9
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.1e-142 508.1 357 76.8
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 6.8e-141 504.6 388 75.3
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.2e-140 503.8 351 82.6
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.2e-140 503.8 379 80.7
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.4e-140 502.3 368 79.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.4e-140 501.9 385 76.1
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 7.5e-140 501.1 386 76.4
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.7e-139 500.0 373 75.9
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.9e-138 496.5 367 77.4
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 3.2e-138 495.7 352 79.3
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 5.4e-138 495.0 364 76.9
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 7.0e-138 494.6 389 72.8
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 7.0e-138 494.6 373 79.4
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 9.2e-138 494.2 352 77.0
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.8e-137 491.1 368 73.4
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.8e-137 491.1 367 76.6
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.3e-136 490.3 375 74.7
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.3e-136 490.3 377 79.6
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.3e-136 489.6 352 82.1
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 3.0e-136 489.2 375 74.7
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 3.9e-136 488.8 367 76.6
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 3.3e-135 485.7 367 75.7
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.1e-134 483.0 353 82.7
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 6.2e-134 481.5 360 76.1
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-133 480.7 388 72.2
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.1e-133 479.2 356 78.9
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 8.9e-133 477.6 343 78.4
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.5e-132 476.9 376 71.3
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.5e-132 476.9 339 79.4
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-132 476.5 402 71.4
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 5.8e-132 474.9 354 78.5
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 9.8e-132 474.2 367 73.8
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 9.8e-132 474.2 320 83.1
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 8.3e-131 471.1 367 71.4
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.4e-130 470.3 407 68.6
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.5e-129 465.7 368 73.9
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 4.6e-129 465.3 367 75.5
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.0e-128 464.2 369 71.0
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.6e-127 458.4 342 72.5
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 6.2e-126 454.9 346 76.9
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 8.1e-126 454.5 344 77.3
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 8.1e-126 454.5 344 77.3
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 8.1e-126 454.5 344 73.0
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 2.3e-125 453.0 344 76.2
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.0e-125 452.2 363 76.0
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 4.0e-125 452.2 368 72.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 5.2e-125 451.8 344 75.9
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.0e-124 449.9 358 71.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.3e-123 447.2 357 70.6
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.4e-122 443.7 388 63.1
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.2e-121 440.7 368 69.0
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.3e-119 432.6 346 76.0
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 5.2e-117 425.2 355 67.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 8.9e-117 424.5 359 64.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.3e-112 410.6 350 64.9
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 5.1e-112 408.7 312 73.1
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.3e-111 406.0 320 73.4
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-108 397.5 341 62.2
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 2.9e-107 392.9 283 84.1
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.7e-105 386.3 337 61.4
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.1e-104 382.1 288 73.6
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.1e-103 380.9 267 76.4
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.9e-98 363.6 351 57.8
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.4e-98 363.2 326 60.4
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-96 357.1 307 71.3
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.5e-95 354.0 348 57.2
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.3e-95 352.4 286 63.6
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 5.6e-95 352.1 218 88.1
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.1e-93 347.8 357 54.9
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.4e-93 346.7 343 56.9
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 5.3e-93 345.5 356 61.2
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.2e-91 340.1 242 78.1
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 4.2e-90 335.9 269 68.8
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.0e-88 329.7 224 81.7
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 9.3e-82 308.1 288 64.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-68 262.7 182 78.6
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 6.1e-49 199.1 124 85.5
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.4e-48 198.0 138 76.1
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.0e-47 194.1 130 82.3
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.1e-42 178.3 150 70.0
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 5.9e-36 156.0 144 66.0
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 2.1e-33 147.5 97 79.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.6e-28 129.8 105 68.6
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.1e-26 125.2 70 81.4
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 1.1e-26 125.2 70 81.4
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.6e-25 121.3 70 80.0
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.0e-19 100.5 75 58.7
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 5.6e-18 96.3 58 93.1
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 2.8e-17 94.0 81 66.7
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.6e-17 93.6 130 47.7
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.3e-16 90.9 62 85.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.9e-14 84.0 93 53.8
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.9e-14 83.2 51 86.3
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 4.6e-12 76.6 57 75.4
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.6e-12 76.6 42 90.5
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-11 74.7 97 50.5
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 3.3e-10 70.5 70 51.4
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 3.6e-09 67.0 134 41.8
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 8.9e-08 62.4 38 92.1
CAN.G210.2 Capsicum annuum HOM05D004327 ORTHO05D115578 1.5e-07 61.6 31 90.3


User provided reference genes

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