Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017920.1 Solanum lycopersicum HOM05D019653 ORTHO05D010901 9.2e-104 380.2 186 100.0
PGSC0003DMG400010980 Solanum tuberosum HOM05D000966 ORTHO05D007323 6.1e-47 191.4 189 59.8
PGSC0003DMG400035778 Solanum tuberosum HOM05D000966 ORTHO05D007323 8.0e-39 164.5 133 64.7
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-32 141.4 315 35.2
PGSC0003DMG400022994 Solanum tuberosum HOM05D000966 ORTHO05D007323 7.2e-32 141.4 238 41.2
PGSC0003DMG400022995 Solanum tuberosum HOM05D019653 ORTHO05D026185 1.4e-30 137.1 123 65.9
PGSC0003DMG400010972 Solanum tuberosum HOM05D000966 ORTHO05D007323 9.8e-29 131.0 160 47.5
Peaxi162Scf00088g00919 Petunia axillaris HOM05D000966 ORTHO05D007323 1.3e-28 130.6 122 55.7
Sopen07g004390 Solanum pennellii HOM05D000966 ORTHO05D007323 2.8e-28 129.4 159 46.5
Solyc07g008460.3 Solanum lycopersicum HOM05D000966 ORTHO05D007323 4.8e-28 128.6 159 46.5
CAN.G555.11 Capsicum annuum HOM05D000966 ORTHO05D007323 4.1e-27 125.6 159 45.9
Peaxi162Scf01038g00145 Petunia axillaris HOM05D000966 ORTHO05D007323 4.0e-22 109.0 85 62.4
Oeu056130.2 Olea europaea HOM05D000966 ORTHO05D007323 8.3e-20 101.3 106 48.1
Nitab4.5_0000949g0070 Nicotiana tabacum HOM05D000966 ORTHO05D007323 1.4e-19 100.5 109 50.5
Nitab4.5_0000617g0300 Nicotiana tabacum HOM05D000966 ORTHO05D007323 1.8e-19 100.1 108 50.9
Lsat_1_v5_gn_8_521 Lactuca sativa HOM05D000966 ORTHO05D007323 9.2e-19 97.8 93 52.7
Oeu020493.1 Olea europaea HOM05D000966 ORTHO05D007323 9.2e-19 97.8 129 45.0
HanXRQChr08g0226091 Helianthus annuus HOM05D000966 ORTHO05D007323 4.5e-18 95.5 128 44.5
Migut.N03097 Erythranthe guttata HOM05D000966 ORTHO05D007323 1.3e-17 94.0 128 43.0
DCAR_001155 Daucus carota HOM05D000966 ORTHO05D007323 3.9e-17 92.4 190 36.3
Rhsim06G0128000 Rhododendron simsii HOM05D000966 ORTHO05D007323 5.0e-17 92.0 97 47.4
MSTRG.22010 Avicennia marina HOM05D000966 ORTHO05D007323 8.6e-17 91.3 135 40.0
Lj4C702T3 Lonicera japonica HOM05D000966 ORTHO05D007323 8.6e-17 91.3 139 40.3
AT1G76710 Arabidopsis thaliana HOM05D000966 ORTHO05D007323 1.1e-16 90.9 108 48.1
ECA233G6088 Erigeron canadensis HOM05D000966 ORTHO05D007323 1.5e-16 90.5 92 50.0
Actinidia17776 Actinidia chinensis HOM05D000966 ORTHO05D007323 1.9e-16 90.1 176 35.8
PGSC0003DMG400045802 Solanum tuberosum HOM05D019653 ORTHO05D026185 1.9e-16 90.1 107 51.4
CSS0040268 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D007323 4.3e-16 89.0 114 43.0
Cc03_g11990 Coffea canephora HOM05D000966 ORTHO05D007323 4.3e-16 89.0 188 37.8
SalBow6G0098 Salvia bowleyana HOM05D000966 ORTHO05D007323 4.3e-16 89.0 92 48.9
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 4.3e-16 89.0 175 34.9
AL2G36860 Arabidopsis lyrata HOM05D000966 ORTHO05D007323 5.6e-16 88.6 108 47.2
CARHR070260 Cardamine hirsuta HOM05D000966 ORTHO05D007323 1.6e-15 87.0 108 47.2
Sopen11g024610 Solanum pennellii HOM05D019653 ORTHO05D026185 1.6e-15 87.0 63 69.8
Carub.0002s2362 Capsella rubella HOM05D000966 ORTHO05D007323 2.1e-15 86.7 108 46.3
Hma1.2p1_0081F.1_g042500 Hydrangea macrophylla HOM05D000966 ORTHO05D007323 2.1e-15 86.7 94 46.8
THA.LOC104812030 Tarenaya hassleriana HOM05D000966 ORTHO05D007323 2.8e-15 86.3 98 48.0
A07p42360 Brassica napus HOM05D001345 ORTHO05D001190 6.1e-15 85.1 108 45.4
Sp5g31860 Schrenkiella parvula HOM05D000966 ORTHO05D007323 6.1e-15 85.1 108 45.4
Thhalv10018466m.g Eutrema salsugineum HOM05D000966 ORTHO05D007323 8.0e-15 84.7 108 46.3
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 8.0e-15 84.7 52 82.7
BcaC08g47221 Brassica carinata HOM05D000966 ORTHO05D007323 1.0e-14 84.3 157 36.9
C06p50930 Brassica napus HOM05D000966 ORTHO05D007323 1.0e-14 84.3 157 36.9
BolC6t40119H Brassica oleracea HOM05D000966 ORTHO05D007323 1.4e-14 84.0 157 36.9
A07p42380 Brassica napus HOM05D000966 ORTHO05D007323 3.1e-14 82.8 151 37.1
BraA07t31764Z Brassica rapa HOM05D000966 ORTHO05D007323 3.1e-14 82.8 151 37.1
Aa31LG4G6790 Aethionema arabicum HOM05D000966 ORTHO05D007323 4.0e-14 82.4 94 47.9
PGSC0003DMG400034823 Solanum tuberosum HOM05D019653 ORTHO05D026185 4.0e-14 82.4 96 53.1
Sc20g0003630 Simmondsia chinensis HOM05D000966 ORTHO05D007323 6.8e-14 81.6 136 36.0
Ca_10671_v3 Cicer arietinum L. HOM05D000966 ORTHO05D007323 1.5e-13 80.5 155 36.8
Eucgr.F02689 Eucalyptus grandis HOM05D000966 ORTHO05D007323 2.0e-13 80.1 94 45.7
Glyma.20G168900 Glycine max HOM05D000966 ORTHO05D007323 2.0e-13 80.1 131 37.4
Sopen07g004520 Solanum pennellii HOM05D000966 ORTHO05D007323 2.0e-13 80.1 82 48.8
GSVIVG01034572001 Vitis vinifera HOM05D000966 ORTHO05D007323 2.0e-13 80.1 92 45.7
Duzib116G0132 Durio zibethinus HOM05D000966 ORTHO05D007323 3.4e-13 79.3 92 45.7
Lj5g0028132 Lotus japonicus HOM05D000966 ORTHO05D007323 3.4e-13 79.3 99 43.4
Potri.005G195400 Populus trichocarpa HOM05D000966 ORTHO05D007323 4.4e-13 79.0 92 44.6
VMungo0720G0673 Vigna mungo HOM05D000966 ORTHO05D007323 4.4e-13 79.0 144 38.2
CDE12G0409 Ceratophyllum demersum HOM05D000966 ORTHO05D007323 5.8e-13 78.6 126 38.1
AUR62026672 Chenopodium quinoa HOM05D000966 ORTHO05D007323 5.8e-13 78.6 114 38.6
AUR62040579 Chenopodium quinoa HOM05D000966 ORTHO05D007323 5.8e-13 78.6 114 38.6
Gorai.010G131600 Gossypium raimondii HOM05D000966 ORTHO05D007323 5.8e-13 78.6 107 41.1
Manes.12G141700 Manihot esculenta HOM05D000966 ORTHO05D007323 5.8e-13 78.6 106 42.5
Nitab4.5_0000065g0220 Nicotiana tabacum HOM05D000966 ORTHO05D007323 5.8e-13 78.6 107 43.0
Phvul.007G082400 Phaseolus vulgaris HOM05D000966 ORTHO05D007323 5.8e-13 78.6 142 36.6
PGSC0003DMG400022981 Solanum tuberosum HOM05D000966 ORTHO05D007323 5.8e-13 78.6 142 37.3
Zm00001eb082920 Zea mays HOM05D000966 ORTHO05D007323 5.8e-13 78.6 126 38.1
Ah.02g124940 Amaranthus hybridus HOM05D000966 ORTHO05D007323 7.5e-13 78.2 93 44.1
Gohir.D06G115100 Gossypium hirsutum HOM05D000966 ORTHO05D007323 7.5e-13 78.2 107 41.1
Cpa.g.sc49.86 Carica papaya HOM05D000966 ORTHO05D007323 9.8e-13 77.8 165 35.2
MELO3C008329.2 Cucumis melo HOM05D000966 ORTHO05D007323 9.8e-13 77.8 97 42.3
Psat6g191160 Pisum sativum HOM05D000966 ORTHO05D007323 1.3e-12 77.4 158 35.4
PGR042G2706 Punica granatum HOM05D000966 ORTHO05D007323 1.3e-12 77.4 94 44.7
Thecc.08G157600 Theobroma cacao HOM05D000966 ORTHO05D007323 1.3e-12 77.4 107 41.1
TPR.G17050 Trifolium pratense HOM05D000966 ORTHO05D007323 1.7e-12 77.0 155 32.9
Hund26681 Selenicereus undatus HOM05D000966 ORTHO05D007323 2.2e-12 76.6 144 35.4
Atru.chr13.2052 Acer truncatum HOM05D000966 ORTHO05D007323 2.9e-12 76.3 92 44.6
Glyma.10G222800 Glycine max HOM05D000966 ORTHO05D007323 2.9e-12 76.3 155 35.5
Gohir.A06G111200 Gossypium hirsutum HOM05D000966 ORTHO05D007323 2.9e-12 76.3 92 44.6
PSO700G0340 Papaver somniferum HOM05D000966 ORTHO05D007323 2.9e-12 76.3 105 38.1
TWI34G1291 Tripterygium wilfordii HOM05D000966 ORTHO05D007323 2.9e-12 76.3 130 36.2
CANSAT25G2301 Cannabis sativa HOM05D000966 ORTHO05D007323 3.7e-12 75.9 118 36.4
CsaV3_6G005070 Cucumis sativus L. HOM05D000966 ORTHO05D007323 3.7e-12 75.9 108 40.7
Nn3g18699 Nelumbo nucifera HOM05D000966 ORTHO05D007323 3.7e-12 75.9 124 39.5
TAR381G1161 Trochodendron aralioides HOM05D000966 ORTHO05D007323 3.7e-12 75.9 143 35.0
Aqoxy4G02511 Aquilegia oxysepala HOM05D000966 ORTHO05D007323 4.9e-12 75.5 133 36.1
Lalb_Chr02g0141501 Lupinus albus HOM05D000966 ORTHO05D007323 6.4e-12 75.1 92 44.6
Os04g0429100 Oryza sativa ssp. japonica HOM05D000966 ORTHO05D007323 6.4e-12 75.1 121 39.7
Cc03_g13120 Coffea canephora HOM05D000966 ORTHO05D007323 8.3e-12 74.7 77 50.6
arahy.Tifrunner.gnm1.ann1.Z2GQ5K Arachis hypogaea HOM05D000966 ORTHO05D007323 1.4e-11 73.9 165 35.8
CiPaw.15G013800 Carya illinoinensis HOM05D000966 ORTHO05D007323 1.4e-11 73.9 116 41.4
Sed0009464 Sechium edule HOM05D000966 ORTHO05D007323 1.4e-11 73.9 164 34.1
Solyc07g008580.3 Solanum lycopersicum HOM05D000966 ORTHO05D007323 1.4e-11 73.9 78 47.4
PSO170G0768 Papaver somniferum HOM05D000966 ORTHO05D007323 2.4e-11 73.2 105 37.1
ATR0584G286 Amborella trichopoda HOM05D000966 ORTHO05D007323 3.2e-11 72.8 94 41.5
Cfa018294 Carpinus fangiana HOM05D000966 ORTHO05D007323 3.2e-11 72.8 171 32.7
Medtr1g098000 Medicago truncatula HOM05D000966 ORTHO05D007323 3.2e-11 72.8 192 32.3
Medtr1g098370 Medicago truncatula HOM05D000966 ORTHO05D007323 3.2e-11 72.8 191 30.9
arahy.Tifrunner.gnm1.ann1.83HUSC Arachis hypogaea HOM05D000966 ORTHO05D007323 9.2e-11 71.2 165 34.5
SEGI_26212 Sequoiadendron giganteum HOM05D000966 ORTHO05D007323 2.0e-10 70.1 92 41.3
Sabra05G0148900 Salix brachista HOM05D000966 ORTHO05D007323 1.0e-09 67.8 173 31.2
ClCG08G008820 Citrullus lanatus HOM05D000966 ORTHO05D007323 1.3e-09 67.4 130 37.7
Solyc09g059997.1 Solanum lycopersicum HOM05D000966 ORTHO05D007323 6.6e-09 65.1 79 46.8
COL.COLO4_13799 Corchorus olitorius HOM05D000966 ORTHO05D007323 2.5e-08 63.2 88 40.9
vmacro17763 Vaccinium macrocarpon HOM05D000966 ORTHO05D007323 7.3e-08 61.6 66 47.0
CAN.G192.13 Capsicum annuum HOM05D000966 ORTHO05D007323 1.2e-07 60.8 65 46.2
Ciclev10000952m.g Citrus clementina HOM05D000966 ORTHO05D007323 1.2e-07 60.8 113 32.7
Haze_17793 Corylus avellana HOM05D000966 ORTHO05D007323 2.1e-07 60.1 149 29.5
MD05G1031300 Malus domestica HOM05D000966 ORTHO05D007323 8.0e-07 58.2 65 46.2
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 8.0e-07 58.2 65 46.2
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 1.4e-06 57.4 107 34.6
Cc03_g12010 Coffea canephora HOM05D000966 ORTHO05D007323 4.0e-06 55.8 65 44.6
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 4.0e-06 55.8 65 44.6
GSVIVG01034571001 Vitis vinifera HOM05D000966 ORTHO05D007323 5.2e-06 55.5 84 38.1


User provided reference genes

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