Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 7.7e-115 417.2 209 100.0
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 4.4e-86 321.6 198 84.3
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 5.0e-74 281.6 178 82.0
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.3e-53 211.1 198 64.1
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.1e-52 208.8 199 61.3
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.6e-50 201.1 202 61.4
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 2.3e-42 176.4 194 54.6
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 4.0e-23 112.5 149 47.7
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 9.0e-23 111.3 154 46.8
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 5.8e-22 108.6 139 50.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 5.8e-22 108.6 194 41.8
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 3.8e-21 105.9 176 43.8
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 4.9e-21 105.5 80 68.8
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 8.4e-21 104.8 136 46.3
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 8.4e-21 104.8 136 46.3
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.1e-20 104.4 64 76.6
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.1e-20 104.4 82 65.9
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.4e-20 104.0 105 53.3
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.9e-20 103.6 190 42.6
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.9e-20 103.6 68 73.5
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.9e-20 103.6 75 70.7
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 2.5e-20 103.2 136 49.3
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.5e-20 103.2 75 70.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 3.2e-20 102.8 122 50.0
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.2e-20 102.4 124 48.4
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 5.5e-20 102.1 140 45.0
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 5.5e-20 102.1 82 67.1
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 7.1e-20 101.7 160 47.5
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.1e-20 101.7 160 47.5
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 7.1e-20 101.7 151 43.0
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 9.3e-20 101.3 134 44.8
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 9.3e-20 101.3 127 52.0
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 9.3e-20 101.3 79 67.1
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.3e-20 101.3 79 67.1
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.3e-20 101.3 79 67.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.3e-20 101.3 79 67.1
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 9.3e-20 101.3 142 47.2
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 9.3e-20 101.3 68 72.1
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 9.3e-20 101.3 75 68.0
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.2e-19 100.9 187 39.6
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.6e-19 100.5 81 64.2
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 2.1e-19 100.1 82 62.2
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.1e-19 100.1 160 46.9
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.1e-19 100.1 129 49.6
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.7e-19 99.8 67 73.1
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.7e-19 99.8 78 66.7
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 2.7e-19 99.8 70 71.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.7e-19 99.8 163 42.9
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 3.5e-19 99.4 67 71.6
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 3.5e-19 99.4 141 43.3
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 3.5e-19 99.4 59 81.4
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 3.5e-19 99.4 127 47.2
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 4.6e-19 99.0 121 54.5
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 4.6e-19 99.0 66 75.8
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 4.6e-19 99.0 80 63.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 6.0e-19 98.6 66 72.7
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 6.0e-19 98.6 88 60.2
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 6.0e-19 98.6 67 70.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 7.9e-19 98.2 111 51.4
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.0e-18 97.8 90 58.9
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.0e-18 97.8 77 68.8
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.0e-18 97.8 59 81.4
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.0e-18 97.8 73 65.8
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.3e-18 97.4 89 62.9
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.3e-18 97.4 142 45.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.8e-18 97.1 74 66.2
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.8e-18 97.1 75 65.3
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.8e-18 97.1 127 46.5
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 1.8e-18 97.1 135 48.1
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.8e-18 97.1 73 65.8
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 3.0e-18 96.3 76 65.8
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 3.0e-18 96.3 57 80.7
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.9e-18 95.9 64 75.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 3.9e-18 95.9 84 60.7
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.9e-18 95.9 183 41.0
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 3.9e-18 95.9 144 44.4
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 5.1e-18 95.5 88 59.1
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 5.1e-18 95.5 98 55.1
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 6.7e-18 95.1 147 42.9
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 8.7e-18 94.7 64 73.4
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 8.7e-18 94.7 64 73.4
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 8.7e-18 94.7 67 70.1
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.1e-17 94.4 69 69.6
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.1e-17 94.4 134 44.8
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.5e-17 94.0 64 71.9
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.5e-17 94.0 64 71.9
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.9e-17 93.6 55 80.0
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.9e-17 93.6 105 52.4
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.9e-17 93.6 78 62.8
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.5e-17 93.2 64 71.9
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.3e-17 92.8 72 66.7
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 3.3e-17 92.8 131 44.3
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 4.3e-17 92.4 59 74.6
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 7.4e-17 91.7 92 55.4
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 7.4e-17 91.7 78 62.8
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 7.4e-17 91.7 131 47.3
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 9.6e-17 91.3 152 44.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 9.6e-17 91.3 75 62.7
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 9.6e-17 91.3 102 52.0
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.3e-16 90.9 87 59.8
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-16 90.9 87 59.8
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.7e-16 89.4 66 65.2
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 3.7e-16 89.4 118 44.9
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 6.2e-16 88.6 52 82.7
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 6.2e-16 88.6 52 82.7
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 6.2e-16 88.6 76 63.2
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 8.2e-16 88.2 65 69.2
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.2e-16 88.2 78 62.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 8.2e-16 88.2 75 61.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.4e-15 87.4 137 44.5
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.4e-15 87.4 137 44.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.8e-15 87.0 69 65.2
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 2.4e-15 86.7 105 46.7
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 5.3e-15 85.5 92 54.3
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.2e-14 84.3 59 66.1
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.0e-14 83.6 57 71.9
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 2.6e-14 83.2 57 73.7
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 2.6e-14 83.2 100 51.0
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.6e-14 81.6 122 45.9
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.0e-13 81.3 56 73.2
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.9e-13 79.7 57 68.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.9e-13 79.7 57 68.4
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 3.8e-13 79.3 119 45.4
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 1.4e-12 77.4 179 33.5
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.9e-12 77.0 74 51.4
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.9e-12 77.0 69 55.1
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.5e-12 76.6 85 47.1
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 4.2e-12 75.9 51 64.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.6e-11 72.4 70 51.4
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 2.3e-10 70.1 68 48.5
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 3.3e-09 66.2 43 72.1
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 6.3e-08 62.0 50 56.0


User provided reference genes

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