Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 7.2e-116 420.6 217 100.0
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.6e-107 392.9 216 92.1
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 2.1e-107 392.5 212 93.9
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 3.0e-106 388.7 216 91.7
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 5.2e-106 387.9 211 92.9
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.7e-104 382.9 216 90.3
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.0e-97 359.4 213 87.3
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.6e-89 332.4 210 79.0
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 7.5e-89 330.9 217 76.5
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 7.5e-89 330.9 217 77.4
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 2.9e-88 328.9 217 77.9
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 3.7e-88 328.6 221 76.9
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 4.9e-88 328.2 220 79.1
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.4e-87 326.6 218 76.1
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 1.8e-87 326.2 214 76.6
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 4.1e-87 325.1 215 74.9
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.2e-86 323.6 216 75.0
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 1.6e-86 323.2 230 74.3
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.6e-86 321.6 227 74.4
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 7.8e-86 320.9 216 74.5
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 2.3e-85 319.3 215 74.0
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 2.3e-85 319.3 216 74.1
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.3e-85 319.3 217 74.2
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 3.0e-85 318.9 216 74.1
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 3.0e-85 318.9 220 74.1
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 3.0e-85 318.9 216 74.1
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.9e-85 318.5 216 73.6
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 5.0e-85 318.2 216 74.5
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.1e-84 317.0 213 75.6
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.9e-84 316.2 216 73.6
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 1.9e-84 316.2 213 76.1
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 3.3e-84 315.5 216 73.6
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 3.3e-84 315.5 207 76.8
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 4.3e-84 315.1 216 73.1
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 4.3e-84 315.1 216 73.1
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 4.3e-84 315.1 217 72.8
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 5.6e-84 314.7 208 76.4
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.2e-83 313.5 216 73.6
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.6e-83 313.2 216 72.7
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.6e-83 313.2 216 72.7
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.1e-83 312.8 207 76.3
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 2.1e-83 312.8 207 76.3
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 4.7e-83 311.6 216 74.1
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 8.0e-83 310.8 218 71.6
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 1.4e-82 310.1 222 71.6
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.4e-82 310.1 217 72.4
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 1.4e-82 310.1 207 75.8
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.4e-82 310.1 219 71.2
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 3.1e-82 308.9 222 71.6
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 3.1e-82 308.9 222 71.6
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 3.1e-82 308.9 226 70.4
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 3.1e-82 308.9 218 71.1
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 4.0e-82 308.5 218 73.4
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 4.0e-82 308.5 218 73.4
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 8.9e-82 307.4 215 72.1
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 1.2e-81 307.0 209 75.6
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 1.2e-81 307.0 216 72.7
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.2e-81 307.0 214 71.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.0e-81 306.2 207 72.9
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 2.0e-81 306.2 220 74.1
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 2.6e-81 305.8 226 69.9
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 2.6e-81 305.8 259 65.3
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 3.4e-81 305.4 211 74.9
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 4.4e-81 305.1 207 73.9
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 5.8e-81 304.7 207 74.4
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 7.5e-81 304.3 210 72.9
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 7.5e-81 304.3 215 70.2
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 9.8e-81 303.9 207 73.4
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.3e-80 303.5 215 70.2
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.3e-80 303.5 205 74.1
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 1.7e-80 303.1 207 73.4
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 2.2e-80 302.8 208 73.6
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 3.7e-80 302.0 207 72.9
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 4.9e-80 301.6 225 68.9
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 4.9e-80 301.6 216 70.4
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.4e-80 301.2 216 70.4
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 8.3e-80 300.8 212 72.2
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.1e-79 300.4 216 69.9
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 1.1e-79 300.4 208 72.1
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 1.4e-79 300.1 229 69.0
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.4e-79 300.1 216 70.4
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.4e-79 299.3 216 70.4
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 4.1e-79 298.5 207 73.4
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 4.1e-79 298.5 214 69.2
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 9.2e-79 297.4 205 72.7
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 1.2e-78 297.0 215 68.4
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 3.5e-78 295.4 215 70.2
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 3.5e-78 295.4 217 70.0
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 3.5e-78 295.4 218 67.9
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 4.6e-78 295.0 205 71.7
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 7.8e-78 294.3 216 69.0
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.3e-77 293.5 216 68.5
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 2.3e-77 292.7 207 72.5
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 6.6e-77 291.2 213 69.5
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 8.6e-77 290.8 214 70.6
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 8.6e-77 290.8 214 67.8
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.1e-76 290.4 193 76.2
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.5e-76 289.3 227 67.4
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 5.6e-76 288.1 223 68.6
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 7.3e-76 287.7 229 65.5
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 9.5e-76 287.3 217 67.7
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.7e-75 285.0 189 81.5
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.1e-74 283.9 207 70.0
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 3.1e-74 282.3 264 60.6
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 5.2e-74 281.6 191 74.9
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.1e-71 273.9 211 69.7
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 3.2e-71 272.3 214 65.0
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 4.6e-70 268.5 192 70.3
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.1e-68 263.8 205 65.4
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 7.3e-68 261.2 179 75.4
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 8.1e-67 257.7 219 63.0
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 1.2e-65 253.8 194 68.6
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 9.9e-65 250.8 216 62.5
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 5.4e-63 245.0 215 62.8
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 1.2e-62 243.8 216 61.6
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 2.1e-62 243.0 220 60.0
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 4.6e-62 241.9 206 59.7
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.8e-59 232.6 201 62.2
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 3.1e-58 229.2 165 72.7
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.6e-57 226.1 214 54.2
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 7.6e-57 224.6 178 62.9
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 1.3e-51 207.2 188 57.4
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.8e-51 206.1 213 51.2
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 8.1e-51 204.5 230 47.8
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 1.8e-50 203.4 202 51.5
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 5.3e-50 201.8 174 63.2
BraA02t06914Z Brassica rapa HOM05D003653 ORTHO05D004249 1.8e-42 176.8 137 70.1
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-36 156.8 89 93.3
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 2.9e-32 142.9 271 33.9
CiPaw.07G188100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.3e-24 117.5 119 60.5
ECA232G0158 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.7e-24 117.1 94 66.0
CSS0010583 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.1e-22 110.2 61 83.6
CSS0016569 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.3e-19 100.9 59 79.7
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 2.8e-19 99.8 206 31.6
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 5.9e-17 92.0 56 71.4
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 3.2e-15 86.3 54 66.7
CSS0016294 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 4.2e-15 85.9 69 65.2
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 5.0e-08 62.4 29 100.0
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 6.1e-06 55.5 113 27.4


User provided reference genes

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