Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.9e-195 685.6 352 100.0
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.7e-189 665.2 350 97.7
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 5.3e-169 597.8 359 85.5
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.7e-157 558.9 357 81.5
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.4e-147 525.0 315 85.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.2e-145 518.8 362 77.1
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 6.0e-136 488.0 313 81.2
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.7e-127 459.9 285 84.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-120 437.2 276 82.6
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.8e-100 370.2 349 58.2
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.5e-99 367.1 209 90.4
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.4e-97 359.8 349 57.9
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 4.0e-92 342.4 353 54.4
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.9e-92 341.7 354 52.3
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 2.5e-89 333.2 350 51.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 3.2e-89 332.8 351 51.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-88 330.5 360 50.8
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.6e-88 328.9 352 51.4
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.8e-87 327.0 348 53.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.9e-87 325.9 352 53.1
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 6.7e-87 325.1 359 51.5
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.9e-86 323.6 351 50.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.3e-85 320.9 344 50.9
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 1.6e-85 320.5 350 50.6
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 3.7e-85 319.3 353 51.8
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 8.2e-85 318.2 351 51.9
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.4e-84 317.4 171 95.3
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.8e-84 317.0 357 51.3
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 1.5e-83 313.9 350 49.4
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.3e-82 310.8 345 49.0
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.3e-82 310.8 335 52.2
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.3e-82 310.8 352 47.2
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.7e-82 310.5 347 49.3
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.9e-82 309.7 353 49.3
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 2.9e-82 309.7 395 46.1
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 6.5e-82 308.5 352 50.0
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.1e-81 307.8 358 50.0
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 7.2e-81 305.1 214 76.2
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-79 300.4 348 48.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.3e-79 300.1 363 47.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.1e-78 297.7 346 49.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.1e-78 297.7 348 49.4
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.9e-78 297.0 347 49.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.3e-78 296.2 347 49.6
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.7e-78 295.4 348 49.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.3e-77 294.3 353 49.6
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 6.9e-76 288.5 346 47.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.2e-75 287.7 345 47.2
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 4.5e-75 285.8 348 46.3
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 5.9e-75 285.4 343 48.1
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 1.3e-74 284.3 347 47.0
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.7e-74 283.9 199 74.4
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.1e-72 276.9 456 40.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.0e-71 273.1 332 48.2
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 8.8e-71 271.6 368 46.2
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.1e-70 271.2 343 46.1
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 9.7e-70 268.1 324 46.9
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.3e-69 267.7 344 44.2
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.7e-69 267.3 344 45.9
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.8e-69 266.5 335 46.9
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 4.8e-69 265.8 343 42.6
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.4e-68 264.2 344 45.3
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 5.3e-68 262.3 350 44.9
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 6.9e-68 261.9 364 43.1
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 9.1e-68 261.5 339 44.0
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-67 261.2 339 43.7
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.2e-67 261.2 344 42.4
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 4.5e-67 259.2 388 41.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.7e-66 257.3 356 44.1
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 5.0e-66 255.8 343 42.3
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 8.5e-66 255.0 346 44.5
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.1e-65 254.6 355 43.7
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 2.5e-65 253.4 341 40.5
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 3.2e-65 253.1 344 41.0
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 3.2e-65 253.1 343 42.6
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 4.2e-65 252.7 351 42.5
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 5.5e-65 252.3 347 44.7
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.2e-64 251.1 340 44.4
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-64 250.8 344 40.4
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.6e-64 250.8 344 42.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-64 250.4 343 42.0
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.7e-64 250.0 339 42.5
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.7e-64 250.0 338 41.1
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.1e-64 248.8 341 40.2
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 6.1e-64 248.8 345 40.6
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.4e-63 247.7 349 43.6
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.9e-63 246.1 361 41.0
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 5.1e-63 245.7 169 78.1
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 6.7e-63 245.4 339 41.9
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.6e-62 243.4 343 44.9
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 3.3e-62 243.0 346 40.8
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 5.7e-62 242.3 347 43.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 9.7e-62 241.5 342 41.2
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 9.7e-62 241.5 344 43.3
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.1e-60 238.0 354 41.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.1e-60 236.1 351 39.3
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 5.3e-60 235.7 360 41.9
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 5.0e-58 229.2 376 37.8
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 2.5e-57 226.9 350 40.9
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.1e-56 223.8 375 40.3
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 8.8e-55 218.4 361 38.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.6e-54 216.9 330 40.6
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.2e-53 213.8 206 55.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 8.2e-53 211.8 310 41.9
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.1e-52 211.5 302 42.1
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.4e-52 210.3 369 38.2
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 2.0e-51 207.2 258 44.2
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.7e-51 206.8 274 43.8
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.8e-47 194.1 368 34.8
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-47 193.7 127 81.9
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 5.2e-47 192.6 185 51.9
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 8.8e-47 191.8 284 41.9
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 4.4e-46 189.5 318 39.0
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 3.7e-45 186.4 353 37.4
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 7.0e-44 182.2 316 37.7
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 9.1e-44 181.8 340 35.6
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 3.6e-40 169.9 261 40.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.5e-38 164.5 101 80.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.0e-38 164.1 249 36.9
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 1.4e-36 157.9 208 46.6
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 265 37.4
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 265 37.4
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 265 37.4
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 287 33.4
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 5.4e-28 129.4 226 38.9
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 4.6e-27 126.3 255 36.9
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 5.0e-26 122.9 120 52.5
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.6e-24 117.9 390 28.7
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 4.0e-23 113.2 399 27.6
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.9e-17 94.4 93 53.8
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 7.3e-17 92.4 104 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.4e-15 88.2 218 26.6
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.4e-15 88.2 62 79.0
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.2e-13 80.9 199 28.1
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.6e-11 74.7 66 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 4.6e-11 73.2 373 23.9
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.0e-11 72.8 66 56.1
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 9.5e-09 65.5 196 28.6
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 3.6e-08 63.5 70 45.7
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 1.4e-07 61.6 48 66.7
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 6.8e-07 59.3 104 35.6
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 9.9e-06 55.5 42 66.7


User provided reference genes

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