Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g016095.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.2e-48 196.1 94 100.0
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.2e-45 185.3 94 93.6
Solyc11g028070.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 7.4e-33 143.7 84 81.0
Sopen11g012530 Solanum pennellii HOM05D009059 ORTHO05D011207 3.7e-32 141.4 84 79.8
Solyc11g028040.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 8.1e-32 140.2 84 79.8
Solyc07g006380.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.5e-30 136.0 91 71.4
Sopen07g002470 Solanum pennellii HOM05D009059 ORTHO05D011207 1.1e-28 129.8 91 68.1
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 3.9e-26 121.3 84 70.2
CAN.G1610.5 Capsicum annuum HOM05D009059 ORTHO05D011207 3.7e-24 114.8 85 64.7
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 1.1e-23 113.2 78 67.9
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 2.4e-23 112.1 85 64.7
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 1.5e-22 109.4 86 66.3
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 2.0e-22 109.0 56 94.6
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 3.4e-22 108.2 85 63.5
Solyc07g016120.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.3e-21 106.3 59 88.1
CAN.G584.67 Capsicum annuum HOM05D009059 ORTHO05D011207 2.2e-21 105.5 85 61.2
CAN.G1084.27 Capsicum annuum HOM05D009059 ORTHO05D011207 2.9e-21 105.1 85 60.0
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 8.4e-21 103.6 77 62.3
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.4e-20 102.8 77 63.6
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.4e-20 102.8 77 63.6
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.2e-20 101.7 77 61.0
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.5e-20 100.9 77 61.0
CAN.G1610.6 Capsicum annuum HOM05D009059 ORTHO05D011207 3.9e-18 94.7 63 66.7
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.5e-17 92.8 77 58.4
CAN.G3387.1 Capsicum annuum HOM05D009059 ORTHO05D011207 2.5e-17 92.0 64 62.5
CAN.G1084.28 Capsicum annuum HOM05D009059 ORTHO05D011207 2.2e-16 89.0 63 61.9
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.8e-16 88.6 77 53.2
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 3.7e-16 88.2 85 52.9
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 2.0e-14 82.4 49 73.5
Peaxi162Scf00297g00816 Petunia axillaris HOM05D009059 ORTHO05D011207 5.0e-13 77.8 77 48.1
CAN.G1084.29 Capsicum annuum HOM05D009059 ORTHO05D011207 1.9e-12 75.9 53 64.2
Peaxi162Scf00297g00815 Petunia axillaris HOM05D009059 ORTHO05D011207 1.6e-11 72.8 90 43.3
Peaxi162Scf00005g00041 Petunia axillaris HOM05D009059 ORTHO05D011207 1.4e-10 69.7 90 41.1
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 8.8e-10 67.0 51 52.9
Peaxi162Scf00005g00035 Petunia axillaris HOM05D009059 ORTHO05D011207 1.5e-09 66.2 89 40.4
Solyc11g028060.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.5e-09 66.2 39 71.8
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.7e-09 64.3 56 50.0
Solyc07g016113.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 5.7e-09 64.3 94 45.7
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 4.8e-08 61.2 45 55.6
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 4.8e-08 61.2 75 42.7
Lalb_Chr05g0229081 Lupinus albus HOM05D001231 ORTHO05D001012 1.4e-07 59.7 78 38.5
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 1.8e-07 59.3 46 52.2
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.8e-07 59.3 74 41.9
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.4e-07 58.9 73 41.1
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 2.4e-07 58.9 46 50.0
MD16G1008900 Malus domestica HOM05D001231 ORTHO05D001012 2.4e-07 58.9 45 44.4
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 2.4e-07 58.9 45 51.1
Duzib248G1477 Durio zibethinus HOM05D001231 ORTHO05D001012 3.1e-07 58.5 63 41.3
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 3.1e-07 58.5 74 41.9
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 4.1e-07 58.2 45 51.1
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.1e-07 58.2 67 46.3
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 5.3e-07 57.8 74 40.5
MD13G1012100 Malus domestica HOM05D001231 ORTHO05D001012 5.3e-07 57.8 54 40.7
Prupe.1G341600 Prunus persica HOM05D001231 ORTHO05D001012 5.3e-07 57.8 45 53.3
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 57.4 46 50.0
MD13G1011400 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 57.4 45 44.4
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 57.4 46 50.0
MD13G1012000 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 57.4 46 50.0
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 57.4 46 50.0
Carub.0008s2442 Capsella rubella HOM05D001231 ORTHO05D001012 9.1e-07 57.0 68 36.8
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 9.1e-07 57.0 70 41.4
Migut.J01199 Erythranthe guttata HOM05D001231 ORTHO05D001012 9.1e-07 57.0 73 39.7
Gohir.A01G033900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 9.1e-07 57.0 78 38.5
MD11G1108800 Malus domestica HOM05D001231 ORTHO05D001012 9.1e-07 57.0 46 47.8
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 9.1e-07 57.0 46 50.0
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 9.1e-07 57.0 77 35.1
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 9.1e-07 57.0 76 40.8
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 1.2e-06 56.6 71 39.4
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 1.2e-06 56.6 69 39.1
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-06 56.6 46 47.8
MD13G1011500 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-06 56.6 51 41.2
MD13G1011600 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-06 56.6 45 44.4
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 1.2e-06 56.6 70 40.0
Lalb_Chr16g0392501 Lupinus albus HOM05D001231 ORTHO05D001012 1.5e-06 56.2 46 50.0
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 2.0e-06 55.8 68 38.2
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.0e-06 55.8 67 35.8
CAN.G976.4 Capsicum annuum HOM05D001231 ORTHO05D001012 2.6e-06 55.5 73 39.7
Thhalv10005228m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 2.6e-06 55.5 68 39.7
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 2.6e-06 55.5 45 48.9
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 2.6e-06 55.5 72 38.9
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 3.4e-06 55.1 67 40.3
PSO675G5343 Papaver somniferum HOM05D001231 ORTHO05D001012 3.4e-06 55.1 47 44.7
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 4.5e-06 54.7 73 37.0
Gorai.002G029600 Gossypium raimondii HOM05D001231 ORTHO05D001012 5.9e-06 54.3 78 37.2
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 5.9e-06 54.3 71 39.4
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 5.9e-06 54.3 71 39.4
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 5.9e-06 54.3 72 38.9
Migut.E00740 Erythranthe guttata HOM05D001231 ORTHO05D001012 7.7e-06 53.9 64 35.9
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 7.7e-06 53.9 78 34.6
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 7.7e-06 53.9 46 41.3


User provided reference genes

Program Settings