Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.7e-197 690.3 343 100.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.1e-161 573.5 343 82.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 9.2e-158 560.5 346 77.7
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-151 539.3 346 76.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.9e-151 538.1 321 83.2
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-150 536.6 343 81.9
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.1e-150 534.3 275 95.3
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-139 499.6 347 75.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.4e-136 488.8 343 71.7
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.7e-116 421.4 341 58.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 9.6e-115 417.5 340 58.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.6e-114 416.8 342 59.9
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.8e-114 416.0 338 57.1
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 6.2e-114 414.8 341 57.8
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.4e-113 413.7 341 58.1
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.1e-113 412.5 338 58.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.1e-113 412.5 338 58.0
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.2e-112 410.6 341 56.9
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.0e-112 409.8 342 59.6
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.6e-112 409.5 329 59.3
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 3.4e-112 409.1 346 57.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 3.8e-111 405.6 341 57.2
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.1e-110 404.1 341 58.4
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.5e-110 402.9 343 56.3
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.2e-109 400.6 342 56.7
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.3e-108 397.1 343 54.8
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.0e-108 396.0 340 55.6
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.0e-108 396.0 342 56.7
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 3.0e-108 396.0 343 54.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.0e-108 396.0 348 58.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 3.9e-108 395.6 343 55.1
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.9e-108 395.6 342 56.1
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 5.1e-108 395.2 340 56.8
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 5.1e-108 395.2 341 54.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.1e-108 395.2 341 54.0
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.1e-108 395.2 341 55.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.9e-107 393.3 342 54.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.9e-107 393.3 342 54.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.5e-107 392.9 346 55.2
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 4.3e-107 392.1 341 56.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.3e-107 392.1 338 56.2
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 7.4e-107 391.3 341 54.3
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 7.4e-107 391.3 342 53.8
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 9.7e-107 391.0 346 55.8
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.3e-106 390.6 341 55.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.3e-106 390.6 341 54.0
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.6e-106 390.2 340 54.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.8e-106 388.7 348 58.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 6.3e-106 388.3 338 55.3
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 8.2e-106 387.9 341 55.7
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 8.2e-106 387.9 337 55.2
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.4e-105 387.1 340 57.1
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.4e-105 386.3 340 55.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.3e-105 385.2 341 55.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-104 384.0 339 54.6
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-104 383.3 338 55.3
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.4e-104 382.5 340 55.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 7.7e-104 381.3 341 56.0
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.7e-104 381.3 338 54.7
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.2e-103 379.8 340 52.9
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.2e-103 379.8 342 54.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 3.8e-103 379.0 340 54.4
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 5.0e-103 378.6 339 54.6
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.5e-103 378.3 341 54.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 8.5e-103 377.9 340 52.9
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.1e-102 377.5 341 54.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.9e-102 376.7 342 56.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.9e-102 376.7 348 53.7
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.2e-102 375.9 342 53.2
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.2e-102 375.9 340 52.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.2e-102 375.6 338 54.4
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 5.5e-102 375.2 344 51.7
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.5e-102 375.2 342 54.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.5e-102 375.2 340 53.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 9.4e-102 374.4 343 53.6
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.6e-101 373.6 342 54.1
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.1e-101 373.2 338 54.7
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.7e-101 372.9 341 54.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-100 370.5 395 49.6
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-99 366.7 344 52.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.3e-99 365.5 344 53.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.4e-99 364.8 341 51.6
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-98 364.0 341 51.9
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 6.3e-98 361.7 331 53.5
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.1e-97 360.9 340 54.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-97 360.9 340 52.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.4e-97 360.5 343 49.9
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.4e-97 359.8 341 52.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 4.1e-97 359.0 344 50.6
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 2.6e-96 356.3 332 52.4
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.4e-96 355.9 344 53.5
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.0e-95 354.4 350 50.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-95 352.1 345 49.6
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.0e-95 352.1 341 51.9
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.1e-94 350.9 343 52.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-94 350.5 342 49.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.5e-94 349.7 342 51.2
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.2e-93 347.4 343 50.4
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.1e-93 346.7 341 50.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-93 346.3 345 50.4
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 6.1e-93 345.1 341 51.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.9e-92 342.4 340 51.2
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.7e-92 341.7 344 50.3
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-91 340.1 349 50.1
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.8e-90 336.3 345 47.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 4.8e-90 335.5 324 50.3
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-87 327.8 351 48.1
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-87 327.0 346 49.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 5.5e-86 322.0 344 49.1
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.0e-83 313.5 347 44.7
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-83 313.2 326 50.0
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 7.4e-83 311.6 341 47.8
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.8e-82 309.7 272 56.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.5e-80 302.4 343 46.9
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.5e-80 302.4 252 60.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 7.7e-80 301.6 290 52.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.0e-79 301.2 344 49.4
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.7e-79 300.4 244 59.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.9e-78 297.0 360 44.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.0e-76 291.2 309 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 6.8e-76 288.5 360 42.2
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.3e-74 284.3 349 45.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.4e-73 280.0 248 57.7
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 9.4e-70 268.1 347 40.3
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 7.5e-67 258.5 356 36.2
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-66 257.7 340 41.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-66 257.7 207 60.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.9e-63 246.5 315 43.5
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.0e-59 233.8 343 43.1
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-57 227.3 260 47.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.6e-54 215.7 489 29.9
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.8e-48 195.3 395 32.2
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.0e-40 169.1 195 42.6
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.9e-38 164.1 286 33.6
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-36 157.5 169 46.2
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.1e-33 146.4 200 40.0
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 9.2e-33 145.2 180 43.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.2e-28 129.4 90 65.6
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.9e-26 122.9 81 67.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.1e-25 121.7 357 27.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.1e-25 119.0 142 43.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.3e-22 109.0 121 43.8
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 8.1e-21 105.5 75 58.7
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-20 104.4 72 62.5
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 3.3e-14 83.6 67 52.2
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.1e-08 64.3 73 38.4
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.0e-07 62.0 73 37.0


User provided reference genes

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