Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-64 249.2 120 100.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 4.3e-62 241.1 119 96.6
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-56 223.0 120 85.8
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-56 223.0 120 85.8
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-54 216.5 120 84.2
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.9e-54 215.7 120 81.7
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.9e-54 215.7 115 86.1
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.4e-52 209.5 120 83.3
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 4.8e-45 184.5 118 74.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 5.3e-44 181.0 118 72.9
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.1e-44 180.3 115 78.3
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.6e-43 178.7 118 72.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 4.5e-43 177.9 118 68.6
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 5.9e-43 177.6 118 72.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-42 176.4 118 71.2
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.2e-42 175.6 117 71.8
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.9e-42 175.3 118 68.6
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.9e-42 175.3 118 66.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 3.8e-42 174.9 118 69.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.8e-42 174.9 118 70.3
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.0e-42 174.5 118 71.2
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.5e-42 173.7 118 69.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 8.5e-42 173.7 118 69.5
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.1e-41 173.3 118 67.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.1e-41 173.3 118 67.8
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.1e-41 173.3 120 66.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.4e-41 172.9 118 70.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.9e-41 172.6 118 69.5
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.9e-41 172.6 118 67.8
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.5e-41 172.2 118 67.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 3.2e-41 171.8 118 69.5
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.2e-41 171.4 117 69.2
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-41 171.4 118 66.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-41 171.4 118 66.9
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 4.2e-41 171.4 118 66.1
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.2e-41 171.4 118 67.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 5.5e-41 171.0 118 68.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 7.2e-41 170.6 118 65.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 9.4e-41 170.2 118 69.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 9.4e-41 170.2 118 69.5
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 9.4e-41 170.2 118 67.8
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.2e-40 169.9 118 67.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.1e-40 169.1 118 61.9
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.1e-40 169.1 118 67.8
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 4.7e-40 167.9 117 67.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.1e-40 167.5 118 66.1
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 6.1e-40 167.5 118 66.1
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 6.1e-40 167.5 118 67.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 7.9e-40 167.2 118 66.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 7.9e-40 167.2 118 64.4
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.0e-39 166.8 118 68.6
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-39 166.8 117 65.8
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.0e-39 166.8 118 61.0
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.0e-39 166.8 118 66.1
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.4e-39 166.4 118 64.4
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.4e-39 166.4 118 67.8
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.4e-39 166.4 118 66.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.3e-39 165.6 113 69.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.3e-39 165.6 118 67.8
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.0e-39 165.2 118 65.3
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.0e-39 165.2 116 66.4
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.9e-39 164.9 117 65.0
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.9e-39 164.9 118 64.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 3.9e-39 164.9 118 67.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.1e-39 164.5 117 64.1
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.1e-39 164.5 117 64.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.1e-39 164.5 117 64.1
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 5.1e-39 164.5 118 66.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.7e-39 164.1 117 65.8
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.7e-39 164.1 118 64.4
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 6.7e-39 164.1 118 64.4
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.7e-39 164.1 118 66.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 8.8e-39 163.7 118 65.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.8e-39 163.7 116 67.2
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 8.8e-39 163.7 117 60.7
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-38 163.3 118 66.9
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.0e-38 162.5 118 65.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-38 162.5 113 69.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.0e-38 162.5 118 65.3
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 3.3e-38 161.8 118 66.1
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.3e-38 161.8 118 61.0
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.4e-38 161.4 112 68.8
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 4.4e-38 161.4 117 65.8
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 5.7e-38 161.0 117 63.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 5.7e-38 161.0 118 65.3
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.4e-38 160.6 118 66.9
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 9.7e-38 160.2 117 64.1
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-37 159.8 118 64.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.2e-37 159.1 118 64.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.8e-37 158.7 114 65.8
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 3.7e-37 158.3 118 62.7
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.8e-37 157.9 117 63.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 4.8e-37 157.9 117 61.5
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 4.8e-37 157.9 118 59.3
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 6.3e-37 157.5 117 64.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 9.1e-36 153.7 119 62.2
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-35 153.3 118 62.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.2e-35 153.3 118 62.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.2e-35 153.3 104 69.2
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-35 152.5 120 60.8
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-35 152.1 120 59.2
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 3.5e-35 151.8 113 61.9
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 4.5e-35 151.4 112 63.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 5.9e-35 151.0 117 61.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.0e-34 150.2 118 59.3
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.7e-34 149.4 118 64.4
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.7e-34 149.4 116 61.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 5.0e-34 147.9 98 71.4
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.5e-33 145.6 118 59.3
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 9.4e-33 143.7 118 61.9
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.7e-32 142.1 117 59.8
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 3.6e-32 141.7 118 56.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 8.0e-32 140.6 111 63.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-31 139.8 120 56.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-31 139.8 120 55.8
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.2e-31 137.9 106 63.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.2e-31 137.9 118 61.0
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 8.8e-31 137.1 97 70.1
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 8.8e-31 137.1 118 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.3e-29 133.3 118 53.4
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-29 132.5 90 72.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-28 130.2 102 64.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.1e-28 128.6 90 68.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.3e-28 127.9 118 50.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.2e-27 126.7 97 62.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 5.9e-27 124.4 117 55.6
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.8e-26 121.7 90 70.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.0e-26 121.3 78 70.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 7.2e-25 117.5 97 60.8
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-24 115.5 99 59.6
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 3.7e-21 105.1 73 65.8
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.8e-21 104.8 85 62.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 5.3e-20 101.3 81 61.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.9e-17 92.8 93 46.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.9e-17 92.8 53 77.4
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.2e-17 92.0 53 75.5
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 3.4e-14 82.0 53 69.8
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 7.5e-14 80.9 118 37.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.3e-13 80.1 53 67.9
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.2e-13 79.3 53 64.2
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 4.1e-12 75.1 53 56.6
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.7e-11 72.4 151 31.1


User provided reference genes

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