Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-177 626.3 311 100.0
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-139 499.6 347 75.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.9e-126 455.7 343 67.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.6e-124 449.9 348 65.5
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 4.9e-118 428.3 348 64.1
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.3e-113 413.7 325 66.5
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-109 399.4 223 87.9
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.3e-107 392.9 347 63.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.9e-102 375.9 348 58.6
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 8.8e-83 311.2 346 48.3
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 9.7e-82 307.8 346 48.3
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.7e-81 305.8 346 47.1
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.8e-81 305.4 346 47.1
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 6.3e-81 305.1 333 48.9
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 8.3e-81 304.7 346 46.0
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 3.1e-80 302.8 342 45.9
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 9.1e-80 301.2 348 45.7
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.2e-79 300.8 344 45.3
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.6e-79 300.4 348 45.7
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.7e-79 299.7 346 46.8
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.5e-79 299.3 346 46.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.5e-79 299.3 346 46.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.3e-78 297.4 348 46.0
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.7e-78 297.0 345 47.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.2e-78 296.6 341 46.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-77 293.9 347 45.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-77 293.9 347 45.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 3.2e-77 292.7 348 44.8
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.2e-77 292.4 348 45.1
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 5.5e-77 292.0 347 45.0
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.6e-76 290.4 350 46.3
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.1e-76 290.0 346 45.7
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.7e-76 288.9 346 46.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 6.1e-76 288.5 346 45.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.0e-75 287.7 346 44.5
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-75 287.3 350 46.3
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 2.3e-75 286.6 346 45.1
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-75 286.6 346 45.7
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.0e-75 286.2 349 45.3
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.2e-75 285.4 312 48.1
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-74 284.3 346 43.6
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.5e-74 283.9 345 44.6
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.0e-74 283.5 346 44.5
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.0e-74 283.5 349 44.7
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.0e-74 283.5 346 45.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-74 283.5 342 45.3
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 3.4e-74 282.7 348 42.8
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.7e-73 280.4 346 44.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.7e-73 280.4 348 43.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.7e-73 280.4 355 44.5
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 8.3e-73 278.1 346 43.1
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.3e-73 278.1 348 44.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 8.3e-73 278.1 346 44.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.1e-72 277.7 345 43.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-72 277.7 346 44.5
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.1e-72 276.2 349 42.1
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.1e-72 275.8 347 44.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 7.0e-72 275.0 345 43.5
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.0e-71 273.5 346 42.8
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.0e-71 273.5 348 41.7
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.0e-71 273.5 345 43.5
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.7e-71 273.1 345 41.7
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.7e-71 273.1 349 42.1
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.5e-71 272.3 345 42.3
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 7.7e-71 271.6 346 41.9
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.7e-71 271.6 346 43.1
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-70 271.2 345 43.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-70 271.2 345 43.2
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 3.8e-70 269.2 349 40.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 8.6e-70 268.1 345 43.5
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.5e-69 267.3 336 44.3
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.9e-69 266.9 346 41.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.5e-69 266.5 344 42.7
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.5e-69 266.5 346 41.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 4.2e-69 265.8 403 40.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 5.5e-69 265.4 345 42.0
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.2e-69 265.0 345 43.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.5e-69 264.6 346 43.1
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.2e-68 264.2 345 42.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.6e-68 263.8 348 42.2
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.6e-68 263.8 346 41.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.1e-68 263.5 343 43.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.1e-68 263.5 346 39.9
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.8e-68 263.1 348 41.4
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.0e-68 261.5 346 42.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.6e-66 256.5 345 42.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-65 253.8 346 39.9
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.8e-65 253.1 348 39.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-65 252.7 345 38.8
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.7e-65 252.7 346 40.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 6.3e-65 251.9 335 41.5
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.4e-64 250.8 345 42.3
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.8e-64 250.4 349 41.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.4e-64 250.0 348 42.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-64 248.4 352 40.1
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-63 245.4 349 39.0
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.3e-62 244.2 350 38.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 2.3e-62 243.4 346 41.6
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-62 243.0 350 39.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-62 242.3 347 38.3
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.6e-62 241.5 348 39.7
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.6e-62 241.5 350 38.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 9.5e-61 238.0 346 39.9
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.4e-59 234.2 321 43.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.0e-59 232.6 353 39.9
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.0e-58 230.3 348 40.2
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-56 224.6 348 37.6
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-56 224.2 332 40.1
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-56 224.2 355 37.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-56 223.8 349 37.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-55 221.1 329 37.7
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.0e-54 218.0 352 35.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.0e-54 216.5 279 42.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.3e-53 212.6 275 43.6
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.6e-52 210.7 350 38.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.1e-51 208.0 270 43.3
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.0e-51 206.1 293 41.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.7e-49 199.5 278 42.1
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-46 190.7 349 33.5
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.9e-46 189.5 242 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 8.6e-46 188.3 283 39.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 7.3e-45 185.3 312 36.5
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 8.1e-44 181.8 361 31.3
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-43 181.4 242 43.4
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.0e-43 179.5 311 36.7
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 9.9e-42 174.9 351 31.9
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-41 174.1 240 41.2
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.3e-38 164.5 280 33.2
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-38 164.1 199 40.7
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.6e-38 161.8 207 44.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-35 153.3 173 44.5
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.0e-34 150.6 313 35.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 6.4e-33 145.6 235 34.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-31 139.4 195 37.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.9e-29 134.0 429 25.4
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 9.9e-26 121.7 333 26.7
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 3.8e-25 119.8 150 44.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.3e-21 106.3 75 60.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.2e-20 102.4 124 41.1
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.8e-14 84.3 94 45.7
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.7e-14 82.0 119 37.8
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 7.6e-10 68.9 73 38.4
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.8e-09 66.6 73 37.0
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.7e-07 60.5 252 23.0


User provided reference genes

Program Settings