Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-300 1034.6 525 100.0
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.4e-292 1007.3 559 92.8
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.4e-220 768.1 526 76.4
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.5e-215 753.1 511 77.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 3.2e-210 735.3 522 74.5
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.8e-200 703.0 557 65.0
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 2.4e-189 666.0 557 63.2
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.3e-183 645.6 563 60.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.7e-182 643.3 559 60.5
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.8e-182 642.5 556 61.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 8.2e-182 641.0 528 62.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-181 640.2 487 67.6
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.3e-181 638.3 554 61.2
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.9e-180 634.8 548 61.5
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-179 633.6 528 62.3
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.2e-179 632.9 544 59.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 9.4e-178 627.5 557 59.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.7e-177 625.9 519 63.2
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-176 623.2 491 65.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.3e-176 622.9 528 61.4
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.6e-175 619.4 553 58.6
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 9.7e-175 617.5 539 60.7
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.7e-174 616.7 493 64.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.8e-174 615.9 524 63.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 8.2e-174 614.4 531 59.7
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.4e-173 612.8 495 63.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 3.1e-173 612.5 555 57.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.2e-172 610.5 495 63.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.0e-172 609.8 488 65.0
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.5e-172 609.0 545 59.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 4.5e-172 608.6 542 59.4
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.5e-172 608.6 559 57.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-171 607.4 493 63.3
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-171 606.7 530 59.4
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.2e-171 606.3 541 58.2
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.9e-171 605.9 492 64.0
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 3.8e-171 605.5 492 63.8
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.9e-170 603.2 556 57.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.2e-170 602.4 544 57.5
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.2e-170 602.4 546 59.3
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 7.2e-170 601.3 490 63.1
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 9.4e-170 600.9 494 62.8
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.2e-169 600.5 494 62.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.7e-168 594.7 499 60.7
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 8.8e-168 594.3 586 54.6
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.1e-167 594.0 494 61.5
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-167 594.0 532 58.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.6e-167 592.8 494 61.1
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 5.7e-167 591.7 510 59.8
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 5.7e-167 591.7 494 61.3
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 9.7e-167 590.9 493 61.7
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.2e-166 589.7 518 59.5
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.7e-166 589.0 494 63.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 4.1e-165 585.5 555 56.9
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 9.1e-165 584.3 485 60.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.6e-164 583.6 529 59.4
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.5e-164 582.4 475 64.2
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.7e-163 580.1 484 60.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 2.2e-163 579.7 493 62.1
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.9e-163 579.3 471 62.6
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.5e-163 578.2 544 55.0
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.1e-162 577.4 531 56.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.3e-160 569.7 487 59.8
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.0e-160 569.3 484 60.5
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.5e-159 567.0 554 54.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.0e-159 566.6 548 56.9
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.7e-158 562.4 342 86.5
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.3e-158 561.2 499 58.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-157 560.1 486 59.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 5.9e-156 555.1 495 59.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.3e-155 553.9 485 58.6
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.2e-155 553.1 532 53.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.2e-155 553.1 491 58.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.5e-154 549.7 488 57.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-153 547.4 492 56.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 9.8e-151 537.7 491 57.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.2e-148 530.8 533 55.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.7e-148 529.6 493 55.4
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-147 526.9 530 54.0
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 6.6e-147 525.0 492 54.1
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.3e-146 522.3 546 54.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.2e-145 520.8 595 49.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-145 520.0 491 53.6
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.1e-145 518.5 489 54.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 6.8e-144 515.0 515 55.5
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.2e-141 506.1 450 60.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 7.0e-141 505.0 491 54.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.2e-140 504.2 333 79.6
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.6e-140 503.8 417 61.2
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 3.5e-140 502.7 490 53.7
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-135 487.3 500 52.6
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.0e-135 486.9 498 52.8
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-135 486.5 500 52.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 6.4e-134 481.9 516 51.7
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 6.4e-134 481.9 488 52.5
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-133 479.9 498 52.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.0e-132 476.9 420 61.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-131 472.6 493 50.5
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.3e-130 469.2 539 50.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 8.1e-129 464.9 486 51.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.1e-128 464.5 452 53.1
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-127 461.1 461 54.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.7e-124 449.9 491 49.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-121 441.0 494 47.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.6e-121 439.5 457 53.8
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-119 434.5 484 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.4e-119 433.0 506 46.6
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 8.4e-118 428.3 492 47.8
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.9e-117 427.2 478 49.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.2e-117 426.4 493 51.5
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 7.1e-117 425.2 432 52.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-115 421.4 522 47.9
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 5.1e-115 419.1 508 46.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.3e-114 416.4 524 46.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 7.3e-114 415.2 492 47.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 9.9e-111 404.8 392 53.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.3e-106 389.8 412 52.9
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 9.6e-106 388.3 391 51.2
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 4.6e-100 369.4 333 58.3
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 5.3e-96 355.9 337 58.2
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.1e-93 348.2 289 62.3
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.3e-93 345.1 458 44.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.5e-92 343.2 324 55.6
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.9e-91 339.7 186 88.7
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 5.1e-91 339.3 392 52.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.6e-90 335.9 641 34.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.9e-86 322.8 424 44.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.1e-83 312.8 324 53.1
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-79 301.2 341 51.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.2e-78 297.4 412 44.4
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.8e-78 296.6 343 46.9
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-73 279.3 312 48.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.5e-71 274.6 153 88.2
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 7.2e-69 265.8 187 73.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.3e-65 255.0 206 61.7
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.3e-65 255.0 217 59.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.1e-64 251.9 169 69.8
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-64 251.9 229 54.1
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.9e-64 249.2 179 64.8
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 6.9e-64 249.2 196 63.8
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 2.0e-63 247.7 301 54.8
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.2e-60 238.4 620 31.6
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-59 234.2 240 50.0
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-56 224.9 263 47.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 9.1e-56 222.2 177 66.1
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-53 215.3 146 69.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 8.8e-51 205.7 500 33.0
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-50 205.3 194 50.5
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-47 194.5 147 63.9
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.0e-44 182.6 130 67.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.8e-43 179.1 118 72.0
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-41 172.9 120 83.3
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-37 161.8 109 68.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.6e-36 157.1 168 44.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-35 155.2 79 98.7
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 4.0e-35 153.7 178 47.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.8e-35 152.9 199 42.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-17 94.4 122 34.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.9e-16 91.7 66 63.6
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 8.9e-11 72.8 73 52.1
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 8.9e-11 72.8 73 49.3
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.0e-10 71.6 63 61.9


User provided reference genes

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