Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.2e-34 147.1 73 100.0
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 7.5e-33 143.3 73 95.9
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 7.5e-33 143.3 73 95.9
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.1e-31 137.9 73 91.8
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.1e-31 137.5 73 93.2
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-31 136.7 73 93.2
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-31 136.7 73 93.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 7.0e-31 136.7 73 91.8
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.1e-31 136.3 73 91.8
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.5e-30 134.0 74 93.2
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-28 129.0 69 92.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.8e-26 120.2 74 83.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 82.4
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 82.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.3e-24 115.9 69 81.2
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.8e-24 114.8 69 79.7
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.9e-20 102.1 71 70.4
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 8.0e-19 96.7 72 69.4
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.4e-18 95.9 72 68.1
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.8e-18 95.5 72 66.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.3e-18 95.1 72 69.4
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.0e-18 94.7 72 68.1
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.0e-18 94.4 72 63.9
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.0e-18 94.4 72 68.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 6.8e-18 93.6 72 65.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 6.8e-18 93.6 72 65.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 6.8e-18 93.6 72 65.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 8.9e-18 93.2 72 62.5
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.2e-17 92.8 72 66.7
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.2e-17 92.8 72 63.9
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.5e-17 92.4 72 65.3
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.5e-17 92.4 70 67.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.0e-17 92.0 72 61.1
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 72 66.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.6e-17 91.7 72 63.9
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 3.4e-17 91.3 72 63.9
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.4e-17 91.3 72 65.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 4.4e-17 90.9 72 62.5
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.4e-17 90.9 71 63.4
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.7e-17 90.5 68 69.1
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.5e-17 90.1 72 62.5
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 9.8e-17 89.7 71 64.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.8e-17 89.7 72 63.9
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 9.8e-17 89.7 72 63.9
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 9.8e-17 89.7 72 63.9
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 9.8e-17 89.7 71 63.4
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 9.8e-17 89.7 72 63.9
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.8e-17 89.7 68 66.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.3e-16 89.4 72 65.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 72 62.5
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.3e-16 89.4 72 61.1
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-16 89.4 72 61.1
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 72 62.5
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.8e-16 88.2 69 60.9
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 3.7e-16 87.8 72 65.3
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-16 87.8 72 61.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-16 87.8 72 61.1
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.7e-16 87.8 72 61.1
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 72 62.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 6.3e-16 87.0 71 63.4
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 8.3e-16 86.7 71 62.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.1e-15 86.3 72 62.5
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.4e-15 85.9 72 61.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 73 58.9
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-15 85.5 72 62.5
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.8e-15 85.5 72 59.7
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.4e-15 85.1 70 62.9
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.2e-15 84.7 72 59.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.2e-15 84.7 72 61.1
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.2e-15 84.7 70 58.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 4.1e-15 84.3 70 62.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.1e-15 84.3 72 61.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.1e-15 84.3 72 59.7
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 5.4e-15 84.0 73 61.6
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 5.4e-15 84.0 72 59.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 5.4e-15 84.0 72 59.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 5.4e-15 84.0 72 61.1
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 7.0e-15 83.6 72 58.3
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 7.0e-15 83.6 72 62.5
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 9.2e-15 83.2 72 63.9
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 9.2e-15 83.2 50 72.0
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 78.7
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-14 82.4 72 56.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-14 82.4 70 61.4
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.6e-14 82.4 59 62.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.0e-14 82.0 71 60.6
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.0e-14 82.0 58 69.0
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.0e-14 82.0 72 56.9
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 2.0e-14 82.0 60 66.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.7e-14 81.6 72 62.5
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.5e-14 81.3 76 56.6
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.6e-14 80.9 71 60.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.6e-14 80.9 72 58.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.6e-14 80.9 47 74.5
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.6e-14 80.9 69 52.2
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.9e-14 80.5 68 57.4
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 5.9e-14 80.5 67 61.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 7.8e-14 80.1 74 54.1
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-13 79.7 72 56.9
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.0e-13 79.7 72 56.9
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.0e-13 79.7 72 54.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-13 79.3 47 74.5
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-13 79.3 72 56.9
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-13 79.3 68 51.5
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-13 79.0 72 55.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-13 79.0 72 58.3
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.7e-13 79.0 74 59.5
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-13 79.0 60 66.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 56.9
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 56.9
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 56.9
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 56.9
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 56.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.3e-13 78.6 47 74.5
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 58.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 59.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-13 78.2 72 56.9
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.9e-13 77.8 44 79.5
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.6e-13 77.0 64 60.9
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 47 72.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 47 74.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-12 75.9 47 72.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.5e-12 75.9 44 77.3
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.5e-12 75.1 44 77.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 5.6e-12 73.9 50 70.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 5.6e-12 73.9 71 57.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.3e-12 73.6 72 54.2
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 9.5e-12 73.2 47 68.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.5e-12 73.2 45 68.9
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.2e-11 72.8 67 53.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.6e-11 71.2 60 65.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 3.6e-11 71.2 70 47.1
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-11 70.9 72 50.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 8.0e-11 70.1 45 64.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 70.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 70.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.4e-10 69.3 72 50.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 70.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 68.2
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 68.2
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 68.2
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 68.2
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 68.2
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.3e-10 68.6 62 58.1
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-09 65.9 69 52.2
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.0e-09 65.5 62 56.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.8e-09 63.9 34 88.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.7e-08 62.4 54 53.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.2e-08 62.0 55 56.4
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 3.7e-08 61.2 53 60.4
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 4.6e-06 54.3 54 51.9
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.8e-06 53.5 44 65.9


User provided reference genes

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