Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g015900.3 Solanum lycopersicum HOM05D000101 ORTHO05D011739 3.4e-83 311.6 157 100.0
Nitab4.5_0002683g0080 Nicotiana tabacum HOM05D000101 ORTHO05D000089 6.5e-26 121.3 220 39.1
CAN.G561.20 Capsicum annuum HOM05D000101 ORTHO05D000089 8.0e-24 114.4 240 35.4
CAN.G137.45 Capsicum annuum HOM05D000101 ORTHO05D000089 5.2e-23 111.7 229 36.2
CAN.G845.13 Capsicum annuum HOM05D000101 ORTHO05D000089 5.2e-23 111.7 265 34.3
Nitab4.5_0003152g0120 Nicotiana tabacum HOM05D000101 ORTHO05D000089 6.8e-23 111.3 283 32.9
CAN.G151.22 Capsicum annuum HOM05D000101 ORTHO05D000089 1.5e-22 110.2 250 33.6
Peaxi162Scf00102g00936 Petunia axillaris HOM05D000101 ORTHO05D000089 1.5e-22 110.2 284 31.7
Sopen00g010390 Solanum pennellii HOM05D000101 ORTHO05D011739 3.4e-22 109.0 56 94.6
Sopen07g005680 Solanum pennellii HOM05D000101 ORTHO05D011739 3.4e-22 109.0 56 94.6
CAN.G2.67 Capsicum annuum HOM05D000101 ORTHO05D000089 7.5e-22 107.8 265 32.8
Nitab4.5_0029243g0010 Nicotiana tabacum HOM05D000101 ORTHO05D000089 7.5e-22 107.8 283 32.2
PGSC0003DMG400012466 Solanum tuberosum HOM05D000101 ORTHO05D000089 1.3e-21 107.1 279 31.9
Nitab4.5_0000185g0080 Nicotiana tabacum HOM05D000101 ORTHO05D000089 2.2e-21 106.3 279 30.8
CAN.G845.3 Capsicum annuum HOM05D000101 ORTHO05D000089 3.7e-21 105.5 258 33.7
Nitab4.5_0005412g0020 Nicotiana tabacum HOM05D000101 ORTHO05D000089 3.7e-21 105.5 258 33.3
Nitab4.5_0006415g0030 Nicotiana tabacum HOM05D000101 ORTHO05D000089 1.1e-20 104.0 273 31.5
CAN.G561.28 Capsicum annuum HOM05D000101 ORTHO05D000089 9.1e-20 100.9 274 30.3
CAN.G845.4 Capsicum annuum HOM05D000101 ORTHO05D000089 9.1e-20 100.9 265 31.7
PGSC0003DMG400012471 Solanum tuberosum HOM05D000101 ORTHO05D000089 9.1e-20 100.9 271 31.7
CAN.G1646.8 Capsicum annuum HOM05D000101 ORTHO05D000089 1.2e-19 100.5 268 32.1
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 1.2e-19 100.5 238 34.0
Nitab4.5_0005412g0010 Nicotiana tabacum HOM05D000101 ORTHO05D000089 1.2e-19 100.5 279 30.1
CAN.G137.49 Capsicum annuum HOM05D000101 ORTHO05D000089 2.0e-19 99.8 265 32.5
Nitab4.5_0000185g0090 Nicotiana tabacum HOM05D000101 ORTHO05D000089 7.7e-19 97.8 284 31.7
PGSC0003DMG401029961 Solanum tuberosum HOM05D000101 ORTHO05D011739 7.7e-19 97.8 56 83.9
PGSC0003DMG402029961 Solanum tuberosum HOM05D000101 ORTHO05D011739 7.7e-19 97.8 56 83.9
Solyc08g013970.3 Solanum lycopersicum HOM05D000101 ORTHO05D000089 1.0e-18 97.4 279 30.8
Sopen08g004810 Solanum pennellii HOM05D000101 ORTHO05D000089 2.3e-18 96.3 279 30.8
PGSC0003DMG400012472 Solanum tuberosum HOM05D000101 ORTHO05D000089 2.9e-18 95.9 278 30.9
CAN.G845.10 Capsicum annuum HOM05D000101 ORTHO05D000089 3.8e-18 95.5 297 29.6
Nitab4.5_0000185g0050 Nicotiana tabacum HOM05D000101 ORTHO05D000089 6.5e-18 94.7 76 61.8
CAN.G1227.23 Capsicum annuum HOM05D000101 ORTHO05D000089 1.1e-17 94.0 75 65.3
CAN.G845.14 Capsicum annuum HOM05D000101 ORTHO05D000089 1.1e-17 94.0 282 30.5
CAN.G561.25 Capsicum annuum HOM05D000101 ORTHO05D000089 1.9e-17 93.2 262 30.9
CAN.G845.8 Capsicum annuum HOM05D000101 ORTHO05D000089 2.5e-17 92.8 290 29.7
CAN.G561.16 Capsicum annuum HOM05D000101 ORTHO05D000089 4.2e-17 92.0 76 57.9
PGSC0003DMG400016656 Solanum tuberosum HOM05D000101 ORTHO05D000089 4.2e-17 92.0 269 30.5
CAN.G1227.26 Capsicum annuum HOM05D000101 ORTHO05D000089 5.5e-17 91.7 259 30.9
CAN.G2.65 Capsicum annuum HOM05D000101 ORTHO05D000089 5.5e-17 91.7 74 64.9
Sopen06g015230 Solanum pennellii HOM05D000101 ORTHO05D000089 5.5e-17 91.7 276 30.1
CAN.G845.2 Capsicum annuum HOM05D000101 ORTHO05D000089 4.7e-16 88.6 268 31.7
CAN.G396.2 Capsicum annuum HOM05D000101 ORTHO05D000089 6.1e-16 88.2 72 61.1
Nitab4.5_0002683g0040 Nicotiana tabacum HOM05D000101 ORTHO05D000089 6.1e-16 88.2 73 63.0
Solyc06g048910.2 Solanum lycopersicum HOM05D000101 ORTHO05D000089 2.3e-15 86.3 276 29.3
Nitab4.5_0006415g0020 Nicotiana tabacum HOM05D000101 ORTHO05D000089 8.9e-15 84.3 285 29.1
PGSC0003DMG400012470 Solanum tuberosum HOM05D000101 ORTHO05D000089 8.9e-15 84.3 263 30.0
Cfa020423 Carpinus fangiana HOM05D000101 ORTHO05D000089 2.0e-14 83.2 214 30.8
Haze_09597 Corylus avellana HOM05D000101 ORTHO05D000089 9.8e-14 80.9 201 29.4
PGSC0003DMG400002276 Solanum tuberosum HOM05D000101 ORTHO05D000089 9.8e-14 80.9 238 30.7
CAN.G673.10 Capsicum annuum HOM05D000101 ORTHO05D000089 6.3e-13 78.2 71 60.6
PGSC0003DMG400002271 Solanum tuberosum HOM05D000101 ORTHO05D000089 6.3e-13 78.2 77 55.8
CAN.G2.60 Capsicum annuum HOM05D000101 ORTHO05D000089 8.3e-13 77.8 56 69.6
PGSC0003DMG400019083 Solanum tuberosum HOM05D000101 ORTHO05D000089 8.3e-13 77.8 263 27.4
QL08p013566 Quercus lobata HOM05D000101 ORTHO05D000089 1.2e-11 73.9 204 29.9
PGSC0003DMG400002278 Solanum tuberosum HOM05D000101 ORTHO05D000089 2.7e-11 72.8 78 55.1
CAN.G561.22 Capsicum annuum HOM05D000101 ORTHO05D000089 5.9e-11 71.6 55 65.5
CAN.G137.47 Capsicum annuum HOM05D000101 ORTHO05D000089 7.8e-11 71.2 56 64.3
CAN.G845.1 Capsicum annuum HOM05D000101 ORTHO05D000089 2.3e-10 69.7 56 62.5
Dinv22309 Davidia involucrata HOM05D000101 ORTHO05D000089 2.3e-10 69.7 56 60.7
CAN.G2.63 Capsicum annuum HOM05D000101 ORTHO05D000589 6.6e-10 68.2 56 64.3
PGSC0003DMG400002275 Solanum tuberosum HOM05D000092 ORTHO05D000089 6.6e-10 68.2 250 29.2
Cfa020430 Carpinus fangiana HOM05D000101 ORTHO05D000089 1.5e-09 67.0 56 58.9
Ciclev10007376m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.5e-09 67.0 73 43.8
GSVIVG01014595001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.9e-09 66.6 73 47.9
Haze_09604 Corylus avellana HOM05D000101 ORTHO05D000089 2.5e-09 66.2 56 60.7
CSS0050203 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 4.3e-09 65.5 87 41.4
Haze_09605 Corylus avellana HOM05D000101 ORTHO05D000089 4.3e-09 65.5 56 58.9
CiPaw.11G103500 Carya illinoinensis HOM05D000101 ORTHO05D000089 5.6e-09 65.1 73 45.2
Haze_04741 Corylus avellana HOM05D000092 ORTHO05D000089 5.6e-09 65.1 115 33.9
Cfa020425 Carpinus fangiana HOM05D000101 ORTHO05D000089 7.3e-09 64.7 74 40.5
QL04p096475 Quercus lobata HOM05D000101 ORTHO05D000089 9.5e-09 64.3 56 57.1
Cfa020424 Carpinus fangiana HOM05D000101 ORTHO05D011739 1.6e-08 63.5 52 57.7
QL06p046470 Quercus lobata HOM05D000101 ORTHO05D000089 1.6e-08 63.5 57 52.6
Cfa020429 Carpinus fangiana HOM05D000101 ORTHO05D000089 2.1e-08 63.2 56 57.1
QL08p013415 Quercus lobata HOM05D000092 ORTHO05D000089 2.1e-08 63.2 113 38.9
CAN.G561.17 Capsicum annuum HOM05D000101 ORTHO05D011739 2.8e-08 62.8 56 55.4
Cfa020419 Carpinus fangiana HOM05D000101 ORTHO05D000089 2.8e-08 62.8 56 55.4
Actinidia09962 Actinidia chinensis HOM05D000101 ORTHO05D000089 3.6e-08 62.4 74 43.2
Cfa020427 Carpinus fangiana HOM05D000101 ORTHO05D000089 3.6e-08 62.4 56 55.4
Hma1.2p1_0348F.1_g131880 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 4.7e-08 62.0 56 53.6
GSVIVG01014599001 Vitis vinifera HOM05D000101 ORTHO05D000089 4.7e-08 62.0 56 50.0
CAN.G673.8 Capsicum annuum HOM05D000101 ORTHO05D000089 8.0e-08 61.2 48 64.6
QL12p007076 Quercus lobata HOM05D000101 ORTHO05D000089 8.0e-08 61.2 236 25.4
Cfa020431 Carpinus fangiana HOM05D000101 ORTHO05D000089 1.0e-07 60.8 73 39.7
CiPaw.01G040800 Carya illinoinensis HOM05D000101 ORTHO05D000089 1.0e-07 60.8 113 35.4
QL12p007021 Quercus lobata HOM05D000101 ORTHO05D000089 1.0e-07 60.8 237 25.3
GSVIVG01038056001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.0e-07 60.8 112 33.9
Cfa020422 Carpinus fangiana HOM05D000101 ORTHO05D012848 1.4e-07 60.5 56 55.4
CiPaw.01G041900 Carya illinoinensis HOM05D000101 ORTHO05D000089 1.4e-07 60.5 56 51.8
Haze_09271 Corylus avellana HOM05D000101 ORTHO05D000089 1.4e-07 60.5 56 53.6
AT4G27190 Arabidopsis thaliana HOM05D000092 ORTHO05D000089 1.8e-07 60.1 57 45.6
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.8e-07 60.1 56 48.2
ATR0752G078 Amborella trichopoda HOM05D000101 ORTHO05D000089 2.3e-07 59.7 171 30.4
CARHR234850 Cardamine hirsuta HOM05D000101 ORTHO05D000089 2.3e-07 59.7 57 43.9
CiPaw.01G041600 Carya illinoinensis HOM05D000101 ORTHO05D000089 2.3e-07 59.7 56 51.8
CiPaw.01G042000 Carya illinoinensis HOM05D000101 ORTHO05D000089 2.3e-07 59.7 56 51.8
Hma1.2p1_1881F.1_g306370 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.0e-07 59.3 56 53.6
QL08p013433 Quercus lobata HOM05D000092 ORTHO05D000089 3.0e-07 59.3 113 37.2
QL08p013754 Quercus lobata HOM05D000101 ORTHO05D000089 3.0e-07 59.3 113 37.2
CiPaw.01G041500 Carya illinoinensis HOM05D000101 ORTHO05D000089 4.0e-07 58.9 56 51.8
Hma1.2p1_3843F.1_g337680 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 4.0e-07 58.9 74 41.9
CSS0046811 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 5.2e-07 58.5 56 48.2
CARHR220850 Cardamine hirsuta HOM05D000101 ORTHO05D000089 5.2e-07 58.5 174 27.6
Haze_09603 Corylus avellana HOM05D000101 ORTHO05D000089 5.2e-07 58.5 111 36.0
QL08p013743 Quercus lobata HOM05D000101 ORTHO05D000089 5.2e-07 58.5 58 50.0
GSVIVG01014596001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.2e-07 58.5 74 39.2
FvH4_3g21750 Fragaria vesca HOM05D000092 ORTHO05D000089 6.8e-07 58.2 61 50.8
FAN16G0809 Fragaria x ananassa HOM05D000092 ORTHO05D000089 6.8e-07 58.2 61 50.8
FAN21G1500 Fragaria x ananassa HOM05D000092 ORTHO05D000089 6.8e-07 58.2 61 50.8
FAN25G1067 Fragaria x ananassa HOM05D000092 ORTHO05D000089 6.8e-07 58.2 61 50.8
Hma1.2p1_2028F.1_g311700 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 6.8e-07 58.2 56 53.6
Nn8g39379 Nelumbo nucifera HOM05D000092 ORTHO05D000089 6.8e-07 58.2 67 46.3
RcHm_v2.0_Chr5g0037231 Rosa chinensis HOM05D000092 ORTHO05D000089 6.8e-07 58.2 61 50.8
MD11G1227500 Malus domestica HOM05D000092 ORTHO05D000089 8.9e-07 57.8 56 53.6
CiPaw.01G041800 Carya illinoinensis HOM05D000101 ORTHO05D000089 1.2e-06 57.4 56 51.8
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.2e-06 57.4 113 35.4
ATR0680G166 Amborella trichopoda HOM05D000101 ORTHO05D000089 1.5e-06 57.0 56 50.0
BcaC06g32706 Brassica carinata HOM05D000101 ORTHO05D000089 1.5e-06 57.0 58 43.1
C07p55340 Brassica napus HOM05D000101 ORTHO05D000089 1.5e-06 57.0 58 43.1
BolC7t46016H Brassica oleracea HOM05D000101 ORTHO05D000089 1.5e-06 57.0 58 43.1
CSS0048772 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D011739 1.5e-06 57.0 56 46.4
CiPaw.01G042400 Carya illinoinensis HOM05D000101 ORTHO05D000089 1.5e-06 57.0 56 50.0
AL7G25610 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 2.0e-06 56.6 57 42.1
A03p57150 Brassica napus HOM05D000101 ORTHO05D000089 2.0e-06 56.6 58 41.4
BraA03t14782Z Brassica rapa HOM05D000101 ORTHO05D000089 2.0e-06 56.6 58 41.4
Haze_09599 Corylus avellana HOM05D000101 ORTHO05D000089 2.0e-06 56.6 73 38.4
QL08p013532 Quercus lobata HOM05D000101 ORTHO05D000089 2.0e-06 56.6 128 32.0
QL08p013726 Quercus lobata HOM05D000101 ORTHO05D000089 2.0e-06 56.6 128 32.0
BcaC01g04663 Brassica carinata HOM05D000101 ORTHO05D000089 2.6e-06 56.2 73 41.1
Hma1.2p1_0133F.1_g061320 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.6e-06 56.2 56 48.2
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.6e-06 56.2 56 51.8
Oeu007623.1 Olea europaea HOM05D000101 ORTHO05D000089 2.6e-06 56.2 113 35.4
Oeu007624.1 Olea europaea HOM05D000101 ORTHO05D000089 2.6e-06 56.2 113 35.4
Peaxi162Scf01038g00112 Petunia axillaris HOM05D000101 ORTHO05D000089 2.6e-06 56.2 49 53.1
Hma1.2p1_1295F.1_g273900 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 4.4e-06 55.5 57 50.9
Solyc08g007250.3 Solanum lycopersicum HOM05D000101 ORTHO05D000089 4.4e-06 55.5 68 48.5
THA.LOC104799889 Tarenaya hassleriana HOM05D000101 ORTHO05D000089 4.4e-06 55.5 57 47.4
BcaC06g32707 Brassica carinata HOM05D000101 ORTHO05D000089 5.8e-06 55.1 58 43.1
BcaNung03053 Brassica carinata HOM05D000101 ORTHO05D000089 5.8e-06 55.1 56 48.2
Hma1.2p1_0198F.1_g085560 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 5.8e-06 55.1 49 55.1
Medtr1g006975 Medicago truncatula HOM05D000092 ORTHO05D000042 5.8e-06 55.1 48 50.0
Medtr7g088640 Medicago truncatula HOM05D000092 ORTHO05D000042 5.8e-06 55.1 48 52.1
Prupe.4G201800 Prunus persica HOM05D000092 ORTHO05D000089 5.8e-06 55.1 56 50.0
QL08p013403 Quercus lobata HOM05D000101 ORTHO05D000089 5.8e-06 55.1 114 36.8
TAR626G0387 Trochodendron aralioides HOM05D000092 ORTHO05D000089 5.8e-06 55.1 113 36.3
GSVIVG01014594001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.8e-06 55.1 72 43.1
ATR0322G040 Amborella trichopoda HOM05D000101 ORTHO05D000089 7.5e-06 54.7 56 48.2
Aqoxy4G01412 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 7.5e-06 54.7 103 31.1
Hma1.2p1_1742F.1_g300170 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 7.5e-06 54.7 56 50.0
Hma1.2p1_2217F.1_g317270 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 7.5e-06 54.7 56 50.0
Oeu007621.1 Olea europaea HOM05D000101 ORTHO05D000089 7.5e-06 54.7 113 34.5
Rhsim02G0094000 Rhododendron simsii HOM05D000092 ORTHO05D000042 7.5e-06 54.7 56 44.6
Ca_05718_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 9.8e-06 54.3 56 46.4
Ca_05719_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 9.8e-06 54.3 56 46.4
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 9.8e-06 54.3 56 50.0
vmacro00949 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 9.8e-06 54.3 55 47.3


User provided reference genes

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