Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 0.0e+00 1240.3 651 100.0
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1208.7 644 98.6
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1085.5 644 89.0
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 3.1e-311 1071.2 644 87.4
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.9e-300 1035.4 644 85.6
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.5e-297 1023.1 644 85.1
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.0e-290 1003.0 647 80.8
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.0e-290 1003.0 647 80.8
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 5.4e-284 980.7 643 79.3
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 3.5e-275 951.4 652 74.7
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-271 939.9 652 75.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.4e-268 928.7 652 74.4
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.8e-266 922.5 647 74.3
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.3e-265 918.3 646 72.0
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 7.4e-265 917.1 650 72.8
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 7.4e-265 917.1 646 72.6
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.1e-263 911.8 645 73.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.2e-262 909.8 647 71.9
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 5.8e-262 907.5 653 73.2
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 5.6e-257 891.0 671 72.1
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.3e-256 889.8 647 70.6
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 2.1e-256 889.0 670 68.7
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.8e-255 885.9 647 70.5
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 3.4e-254 881.7 647 70.5
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 2.9e-253 878.6 758 63.2
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.9e-253 878.6 645 69.8
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 5.5e-252 874.4 652 68.7
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 5.5e-252 874.4 645 69.0
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.6e-251 872.8 665 68.0
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.7e-251 872.1 652 69.3
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.0e-250 870.2 645 68.4
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.7e-250 867.5 653 68.6
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.3e-249 865.1 644 68.9
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 5.7e-249 864.4 645 69.5
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 7.4e-249 864.0 652 69.2
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 9.6e-249 863.6 645 68.7
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.1e-248 862.4 645 67.9
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 2.8e-248 862.1 645 67.3
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 4.8e-248 861.3 644 68.5
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.1e-247 860.1 645 68.1
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.1e-247 860.1 645 68.4
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.4e-247 859.8 738 62.7
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 5.3e-247 857.8 645 68.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.9e-247 857.4 645 67.9
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.0e-246 855.9 652 67.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.0e-245 853.6 668 66.6
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.7e-245 852.8 645 68.5
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.7e-245 852.8 647 68.5
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.9e-245 852.0 650 68.6
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 3.2e-244 848.6 651 66.7
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.2e-244 848.2 651 67.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 9.3e-244 847.0 644 67.4
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.6e-243 846.3 645 67.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.7e-243 845.5 646 68.7
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 2.3e-242 842.4 678 65.6
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.1e-242 841.3 645 67.3
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.7e-242 840.9 645 66.7
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 7.4e-241 837.4 644 67.4
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 2.2e-240 835.9 645 66.5
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 2.8e-240 835.5 658 66.3
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 8.2e-240 833.9 645 68.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.1e-239 832.0 624 70.4
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.0e-238 829.3 645 66.2
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.6e-238 828.9 649 65.2
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 3.4e-238 828.6 645 67.1
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.5e-238 828.2 645 66.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.7e-237 826.2 645 66.5
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.9e-237 825.5 645 65.3
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 3.8e-237 825.1 645 67.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.8e-237 825.1 645 66.0
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 5.0e-237 824.7 649 64.7
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.5e-237 824.3 645 66.5
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 2.5e-236 822.4 627 67.5
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.5e-236 822.4 645 65.6
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 3.2e-236 822.0 647 66.0
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.5e-236 821.2 645 67.0
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 9.4e-236 820.5 645 65.7
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 5.1e-234 814.7 645 65.6
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 6.7e-234 814.3 645 66.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.1e-233 813.5 645 65.6
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.3e-232 810.1 646 65.0
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.2e-232 809.3 678 64.0
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 5.3e-231 804.7 646 65.5
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 3.4e-230 802.0 644 66.3
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.8e-229 798.5 639 63.7
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.4e-228 796.6 658 63.2
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 4.2e-228 795.0 649 63.9
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 9.4e-228 793.9 658 63.1
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 9.4e-228 793.9 647 62.9
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 5.2e-226 788.1 645 62.3
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.2e-226 788.1 648 63.3
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 7.4e-225 784.3 606 69.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 6.3e-224 781.2 652 63.2
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 9.1e-223 777.3 646 62.1
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.6e-222 776.5 645 62.5
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 7.7e-222 774.2 645 62.5
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 1.3e-221 773.5 645 62.2
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 1.3e-221 773.5 645 61.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.7e-221 773.1 645 61.7
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.0e-219 764.2 568 69.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 8.8e-218 760.8 645 61.6
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 1.2e-217 760.4 645 61.2
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.6e-217 759.2 683 59.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 3.3e-217 758.8 645 61.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.8e-216 755.7 620 62.7
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-215 752.7 684 58.8
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 2.0e-214 749.6 651 60.5
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.3e-213 746.9 646 62.5
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.5e-212 741.5 654 59.3
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.5e-212 741.5 662 59.4
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 7.2e-212 741.1 652 59.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.6e-211 740.0 662 60.0
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.8e-210 736.5 597 63.0
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 3.4e-209 732.3 646 60.4
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.3e-208 730.3 652 58.3
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 4.8e-208 728.4 646 58.2
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 2.4e-207 726.1 648 58.5
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 9.1e-207 724.2 646 59.9
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.7e-206 722.6 607 61.0
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.7e-205 719.9 646 58.0
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.3e-205 719.5 654 57.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.1e-204 717.2 642 58.7
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.9e-204 716.5 645 59.1
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 5.5e-204 714.9 664 57.7
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 7.2e-204 714.5 641 58.3
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.0e-201 706.4 617 60.1
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 4.4e-201 705.3 568 64.3
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 5.7e-201 704.9 578 63.3
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 7.0e-199 698.0 615 59.8
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.7e-197 693.3 613 59.5
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 4.3e-196 688.7 615 58.9
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 4.3e-196 688.7 615 58.9
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.3e-196 688.7 648 58.8
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 5.6e-196 688.3 639 57.7
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 2.0e-185 653.3 687 53.1
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.4e-183 646.4 502 68.9
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.9e-176 622.9 696 51.1
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.1e-166 590.1 550 58.9
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 3.5e-166 589.3 645 51.3
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.1e-157 558.9 490 57.6
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.0e-146 522.7 515 56.9
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.0e-136 491.5 649 43.1
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 9.0e-130 468.4 432 59.3
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 5.7e-124 449.1 356 66.6
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 8.2e-115 418.7 320 69.1
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.2e-103 379.8 361 55.4
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 2.8e-99 367.1 379 57.0
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 7.7e-97 359.0 305 60.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.5e-95 354.0 386 50.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.5e-95 352.8 529 42.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.7e-89 332.4 260 65.8
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 8.0e-78 295.8 262 58.4
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.0e-77 295.4 424 43.6
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.6e-70 270.4 309 53.1
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 6.4e-67 259.6 384 45.1
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.7e-64 251.5 641 30.7
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.2e-58 230.7 263 51.3
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 6.0e-57 226.5 297 46.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-55 222.2 156 76.3
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.8e-44 183.3 187 54.0
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.3e-39 167.5 608 26.8
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.0e-37 160.6 162 56.8
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 9.0e-37 159.5 183 51.4
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-35 154.8 118 62.7
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 3.3e-31 141.0 135 56.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.3e-30 139.0 147 51.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.4e-29 134.8 194 42.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 4.0e-29 134.0 96 68.8
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.7e-27 128.6 88 70.5
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.2e-27 128.3 147 48.3
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.1e-23 115.9 79 72.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-23 114.4 80 70.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.7e-22 110.9 140 47.9
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 1.9e-18 98.6 218 35.3
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-17 94.7 67 71.6
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.0e-16 92.8 86 59.3
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.3e-16 92.4 163 36.8
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 8.7e-16 89.7 105 47.6
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.7e-14 84.3 115 39.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-12 79.0 117 43.6
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 1.0e-11 76.3 177 32.8
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 3.2e-10 71.2 49 71.4


User provided reference genes

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