Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.3e-72 275.4 132 100.0
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.1e-70 268.9 132 97.0
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.3e-62 243.0 135 85.2
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 8.7e-56 220.3 132 81.1
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.1e-53 213.4 134 77.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.3e-46 189.9 132 70.5
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 5.3e-45 184.5 132 68.2
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.8e-43 178.3 133 67.7
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 6.5e-43 177.6 132 65.2
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 6.5e-43 177.6 133 67.7
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.1e-42 176.8 133 67.7
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.9e-39 166.0 133 59.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 4.5e-36 154.8 131 57.3
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 7.6e-36 154.1 132 56.1
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.4e-34 149.8 117 59.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.2e-34 148.7 131 55.0
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 7.2e-34 147.5 132 56.8
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 7.2e-34 147.5 132 56.1
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 6.1e-33 144.4 124 58.1
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.0e-32 142.1 131 54.2
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 3.9e-32 141.7 136 52.9
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 5.7e-31 137.9 132 53.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.7e-30 136.3 134 53.0
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 2.2e-30 136.0 115 56.5
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 2.2e-30 136.0 133 51.1
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 8.2e-30 134.0 133 48.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.1e-29 133.7 138 50.0
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.8e-29 132.9 116 56.9
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.8e-29 132.9 133 48.9
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 1.8e-29 132.9 135 48.9
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 3.1e-29 132.1 116 54.3
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.1e-29 132.1 131 50.4
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 9.1e-29 130.6 131 48.9
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 9.1e-29 130.6 131 50.4
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 2.0e-28 129.4 132 50.0
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.0e-28 129.4 118 55.9
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 2.6e-28 129.0 114 51.8
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.6e-28 129.0 117 54.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.5e-28 128.3 128 51.6
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 5.9e-28 127.9 140 50.7
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 5.9e-28 127.9 118 52.5
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 5.9e-28 127.9 140 47.9
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 1.0e-27 127.1 117 55.6
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-27 126.7 116 52.6
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.3e-27 126.7 116 52.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.3e-27 126.7 131 48.9
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.7e-27 126.3 116 52.6
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.7e-27 126.3 133 46.6
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 5.0e-27 124.8 131 47.3
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 5.0e-27 124.8 127 55.1
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 5.0e-27 124.8 117 54.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 5.0e-27 124.8 117 54.7
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 6.5e-27 124.4 131 48.9
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 6.5e-27 124.4 116 51.7
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 8.5e-27 124.0 131 47.3
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.1e-26 123.6 119 52.1
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.1e-26 123.6 133 49.6
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 1.4e-26 123.2 114 50.9
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.4e-26 123.2 117 53.8
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.4e-26 123.2 117 53.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.4e-26 123.2 117 53.0
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.9e-26 122.9 114 53.5
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.5e-26 122.5 134 48.5
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 2.5e-26 122.5 132 46.2
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 3.2e-26 122.1 134 50.0
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.2e-26 121.7 132 47.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 4.2e-26 121.7 131 44.3
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 4.2e-26 121.7 134 45.5
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 5.5e-26 121.3 115 51.3
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 7.2e-26 120.9 132 47.7
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 9.4e-26 120.6 176 42.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 1.6e-25 119.8 116 46.6
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 2.7e-25 119.0 126 50.0
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.7e-25 119.0 118 50.8
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.6e-25 118.6 132 49.2
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 3.6e-25 118.6 132 47.0
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 6.1e-25 117.9 139 45.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 7.9e-25 117.5 133 45.9
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 1.0e-24 117.1 124 44.4
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.0e-24 117.1 115 51.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.4e-24 116.7 118 50.8
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 2.3e-24 115.9 131 43.5
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 3.0e-24 115.5 115 50.4
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.0e-24 115.5 118 47.5
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 3.9e-24 115.2 127 45.7
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.1e-23 113.6 135 43.7
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 2.0e-23 112.8 116 44.0
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 5.7e-23 111.3 117 49.6
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.2e-22 109.4 129 45.7
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 2.8e-22 109.0 116 44.8
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 2.8e-22 109.0 108 47.2
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 3.7e-22 108.6 108 47.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 3.1e-21 105.5 133 43.6
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 4.1e-21 105.1 131 40.5
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 5.3e-21 104.8 108 46.3
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 5.3e-21 104.8 108 46.3
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 5.3e-21 104.8 118 41.5
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 2.6e-20 102.4 131 41.2
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 2.2e-19 99.4 146 39.0
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 5.5e-18 94.7 105 46.7
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.2e-17 93.6 119 42.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 3.6e-17 92.0 131 40.5
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.8e-16 89.7 115 41.7
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.0e-16 89.0 105 43.8
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 4.4e-15 85.1 68 51.5
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 3.1e-13 79.0 72 52.8
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.1e-13 77.4 75 42.7
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 1.2e-12 77.0 80 48.8
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.2e-09 67.0 48 62.5
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 2.7e-09 65.9 100 41.0
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.6e-09 65.5 52 63.5
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.0e-07 59.7 58 50.0
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 3.3e-07 58.9 54 51.9
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 3.3e-07 58.9 73 43.8
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 3.7e-06 55.5 77 40.3
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.7e-06 55.5 69 44.9
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 6.3e-06 54.7 53 47.2


User provided reference genes

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