Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.1e-113 411.4 205 100.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 9.2e-113 410.2 205 99.5
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.7e-111 406.0 205 98.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 1.3e-106 389.8 206 94.7
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.9e-105 386.0 204 93.6
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.9e-97 359.4 204 87.3
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.5e-94 349.0 205 82.4
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.2e-93 346.7 205 81.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.6e-93 346.3 205 81.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.2e-90 335.9 205 78.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 8.4e-90 334.0 205 79.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.4e-89 332.4 207 79.7
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 9.3e-89 330.5 205 78.5
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.6e-88 329.7 205 80.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.1e-88 329.3 205 77.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-86 323.2 205 76.1
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.9e-86 322.8 207 76.3
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.5e-86 322.4 205 74.6
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 5.6e-86 321.2 205 78.0
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 75.6
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 75.6
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.3e-85 320.1 205 75.1
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.1e-85 319.3 206 75.7
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.8e-85 318.9 204 74.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 3.6e-85 318.5 205 76.6
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 75.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.4e-84 316.6 205 77.6
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.4e-84 315.8 208 75.5
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-84 315.5 205 74.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.9e-84 314.3 205 73.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 6.9e-84 314.3 206 74.3
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.5e-83 313.2 195 77.4
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.4e-83 312.0 205 74.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 4.5e-83 311.6 205 74.1
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.5e-83 311.6 205 74.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 5.8e-83 311.2 203 71.9
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.8e-83 311.2 204 74.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.7e-82 309.7 203 75.9
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.9e-82 308.9 206 72.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.4e-82 307.4 205 73.2
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 74.6
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 4.2e-81 305.1 208 71.6
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 5.4e-81 304.7 205 72.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-80 303.5 204 71.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.7e-80 302.4 197 75.6
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 7.9e-80 300.8 199 71.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.0e-79 300.4 228 66.7
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-79 299.7 205 71.7
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.3e-79 299.3 199 72.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.3e-79 299.3 205 71.2
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 5.1e-79 298.1 206 71.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 6.7e-79 297.7 205 72.7
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.5e-78 296.6 199 71.4
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.5e-78 296.6 206 69.9
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.9e-78 296.2 206 70.9
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.3e-78 295.4 206 70.9
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 5.6e-78 294.7 203 70.4
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.6e-78 294.7 204 72.5
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.6e-78 294.7 199 70.4
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.3e-77 293.5 204 70.6
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.6e-77 293.1 206 69.9
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.6e-77 293.1 205 67.8
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 2.8e-77 292.4 204 70.1
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 6.2e-77 291.2 206 70.9
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 8.1e-77 290.8 205 67.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-76 290.0 203 68.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-76 290.0 203 68.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.4e-76 290.0 204 68.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-76 289.7 204 69.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.8e-76 289.7 204 69.1
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.8e-76 289.7 199 70.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.4e-76 289.3 204 68.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 2.4e-76 289.3 199 70.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 4.0e-76 288.5 204 67.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 4.0e-76 288.5 204 69.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 4.0e-76 288.5 204 67.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 4.0e-76 288.5 206 68.4
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.3e-76 288.1 199 68.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 6.9e-76 287.7 204 68.1
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 6.9e-76 287.7 206 70.9
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 9.0e-76 287.3 204 69.1
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 9.0e-76 287.3 199 68.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.2e-75 287.0 257 59.1
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.5e-75 286.6 204 68.6
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.0e-75 286.2 199 70.4
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.6e-75 285.8 204 68.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.6e-75 285.8 206 68.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.4e-75 285.4 208 66.8
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.4e-75 285.4 204 68.6
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 4.5e-75 285.0 205 66.3
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 9.9e-75 283.9 204 68.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.3e-74 283.5 204 68.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-74 283.5 204 68.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-74 283.5 204 68.6
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 69.3
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.3e-74 283.5 210 68.1
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 68.6
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 4.9e-74 281.6 203 69.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 68.1
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 6.4e-74 281.2 207 69.6
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.4e-73 280.0 203 70.4
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-73 279.6 204 67.6
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.9e-73 279.6 200 67.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 67.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 70.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.4e-73 279.3 206 69.4
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.2e-73 278.9 205 70.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.5e-73 278.1 204 67.2
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.1e-72 276.2 194 69.6
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.3e-71 273.5 214 63.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.1e-71 271.6 205 62.4
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 8.7e-71 270.8 205 66.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 5.6e-70 268.1 206 61.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.0e-68 261.9 141 92.9
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.2e-64 250.4 206 60.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.9e-64 247.7 194 63.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.4e-60 236.9 208 54.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 8.5e-58 227.6 209 54.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.3e-55 220.3 215 53.0
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-53 213.8 155 72.9
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.3e-53 213.8 210 52.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.6e-53 213.4 209 51.2
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 3.7e-53 212.2 206 57.3
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-52 210.7 140 74.3
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-52 210.7 148 69.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 4.1e-52 208.8 149 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.8e-47 193.4 207 48.3
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.1e-47 191.8 181 58.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.8e-47 191.0 149 68.5
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 6.5e-42 174.9 134 64.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.2e-40 170.6 127 64.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.7e-27 124.8 191 36.6
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.5e-25 120.6 193 35.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.2e-24 117.5 128 47.7
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.1e-24 115.2 138 49.3
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.8e-23 113.6 197 37.1
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 9.8e-22 107.8 73 64.4
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.3e-21 107.5 67 74.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.8e-21 106.3 66 72.7
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-20 103.6 100 51.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-19 98.6 69 73.9
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 8.8e-15 84.7 74 60.8
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.2e-13 80.1 51 72.5
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.4e-12 76.6 63 60.3
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.6e-10 68.2 68 51.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.6e-10 68.2 50 68.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.6e-10 68.2 50 68.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.1e-08 63.5 115 32.2
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.4e-07 60.8 42 61.9
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 3.4e-06 56.2 81 32.1
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 3.4e-06 56.2 94 39.4


User provided reference genes

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