Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 0.0e+00 1676.0 935 100.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 0.0e+00 1598.2 933 95.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 0.0e+00 1401.0 939 86.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 0.0e+00 1306.6 936 78.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 0.0e+00 1300.4 934 82.0
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 0.0e+00 1285.4 929 81.8
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.0e-283 980.3 942 57.4
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.2e-278 962.6 929 58.3
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 6.6e-275 951.0 928 55.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.2e-269 932.2 925 62.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 7.1e-269 931.0 938 62.2
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.3e-266 922.2 931 61.4
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 4.3e-266 921.8 924 55.3
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 5.6e-250 868.2 927 53.5
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 2.4e-248 862.8 928 51.2
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.3e-246 857.1 960 50.8
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 6.4e-246 854.7 929 56.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.9e-243 845.5 929 50.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.8e-238 828.9 930 49.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.6e-236 823.5 929 49.8
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 4.6e-236 822.0 923 50.4
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 7.9e-236 821.2 917 50.6
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 9.6e-234 814.3 904 56.4
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-233 813.5 929 49.4
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.8e-233 812.8 921 50.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 5.3e-232 808.5 929 49.6
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 5.8e-231 805.1 938 49.6
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 7.6e-231 804.7 933 48.8
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 8.4e-230 801.2 938 51.6
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 3.2e-229 799.3 925 48.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 7.1e-229 798.1 925 49.2
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.6e-228 797.0 928 49.1
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 7.9e-228 794.7 934 48.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 8.7e-227 791.2 924 49.0
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 8.7e-227 791.2 935 49.1
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.5e-226 790.4 891 50.5
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.5e-226 790.4 931 49.4
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.2e-225 786.6 920 51.7
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.7e-225 785.8 930 48.9
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 4.8e-225 785.4 927 48.7
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 2.0e-223 780.0 926 47.7
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.4e-223 779.2 934 48.4
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 5.9e-223 778.5 923 48.6
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-222 777.7 928 48.4
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.7e-222 776.9 918 48.3
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.2e-221 772.7 929 48.5
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 5.5e-221 771.9 931 48.2
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 9.4e-221 771.2 929 48.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 6.1e-220 768.5 878 50.1
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 3.0e-219 766.1 931 49.9
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.0e-219 766.1 915 49.3
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 3.3e-218 762.7 803 52.4
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.3e-218 762.3 927 46.2
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 8.2e-217 758.1 928 48.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 8.2e-217 758.1 939 47.2
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.1e-216 757.7 935 48.1
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.1e-216 756.1 915 48.1
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.1e-216 756.1 936 47.1
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 3.1e-216 756.1 931 47.9
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.0e-214 751.1 926 50.4
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 7.2e-213 745.0 928 50.8
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 3.0e-211 739.6 920 49.9
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 8.8e-211 738.0 1006 45.7
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 7.4e-210 734.9 921 49.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.4e-210 734.9 941 46.5
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 6.3e-209 731.9 921 48.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.1e-208 729.6 925 49.6
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.5e-207 727.2 926 48.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.0e-206 724.5 937 43.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.5e-205 719.9 716 53.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-204 717.2 920 48.5
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 8.0e-204 714.9 925 47.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.3e-203 713.4 958 49.4
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 5.7e-202 708.8 922 46.1
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 6.5e-198 695.3 935 45.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.5e-197 694.1 877 47.5
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.6e-196 690.6 792 54.7
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 5.9e-191 672.2 671 53.2
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.5e-189 666.8 934 44.2
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 7.2e-189 665.2 924 45.2
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 3.0e-187 659.8 931 43.8
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 4.0e-187 659.4 743 52.5
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 6.3e-185 652.1 929 44.3
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 7.0e-184 648.7 649 55.8
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-184 648.7 702 49.9
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 9.1e-184 648.3 911 43.1
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 2.9e-182 643.3 714 49.6
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.8e-180 636.7 1075 40.4
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 4.1e-176 622.9 911 44.9
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.6e-175 619.4 1166 36.5
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.3e-174 617.8 675 55.0
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 4.3e-173 612.8 918 42.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 5.2e-163 579.3 916 43.3
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 2.4e-160 570.5 496 59.7
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.4e-160 569.3 860 44.0
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-153 546.6 921 40.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.6e-146 522.3 545 52.8
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 4.2e-144 516.5 969 39.7
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-131 474.2 439 56.3
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.3e-126 458.4 925 35.9
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.9e-126 456.8 465 52.9
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 4.2e-120 436.8 934 35.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.4e-115 421.0 928 37.1
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 3.0e-110 404.1 412 53.2
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.6e-108 398.3 470 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 4.1e-99 367.1 438 45.4
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.4e-96 358.6 495 43.2
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 8.8e-94 349.4 478 44.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 7.2e-88 329.7 482 44.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.4e-85 320.5 483 40.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 9.7e-85 319.3 356 48.9
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.8e-83 315.1 190 77.9
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.8e-83 315.1 190 77.9
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.6e-79 302.0 391 47.1
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 7.5e-77 293.1 476 41.4
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 8.5e-73 279.6 527 33.6
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-67 260.0 326 46.0
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 7.7e-66 256.5 395 39.7
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.6e-65 253.1 440 40.5
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-63 248.4 183 66.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.8e-63 248.1 488 37.1
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.4e-61 241.1 831 25.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 7.5e-61 240.0 231 56.7
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.8e-59 235.3 499 31.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-58 232.3 245 52.2
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.0e-54 219.5 245 48.6
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 2.6e-53 214.9 387 50.1
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.0e-50 205.3 306 40.8
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 2.7e-50 204.9 340 44.4
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-49 202.2 463 32.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.0e-49 200.7 213 49.8
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.5e-45 189.1 299 39.1
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.3e-40 170.2 137 56.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.9e-38 163.3 170 48.8
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-37 162.5 102 73.5
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 2.9e-36 158.3 453 27.6
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.9e-36 157.5 173 50.9
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.9e-36 157.5 173 50.9
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 5.4e-35 154.1 255 36.1
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-27 129.0 255 38.0
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 8.7e-25 120.2 167 43.7
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-24 118.6 167 43.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 7.3e-24 117.1 107 56.1
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.5e-21 109.4 78 71.8
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 9.9e-21 106.7 190 35.3
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-20 106.3 197 38.1
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 2.9e-20 105.1 607 23.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 3.9e-17 94.7 69 66.7
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.7e-15 88.2 81 49.4
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.4e-14 86.3 196 32.7
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-11 76.6 91 44.0
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.3e-11 73.6 206 27.7
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.9e-09 68.2 138 34.8
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-08 66.2 106 37.7
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 4.0e-06 58.2 46 60.9
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 9.0e-06 57.0 54 51.9


User provided reference genes

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