Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.8e-137 491.5 251 100.0
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.1e-110 403.7 221 95.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.0e-110 401.7 223 94.2
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.1e-98 362.8 221 85.5
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-88 329.7 237 75.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.7e-66 256.1 200 65.0
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 5.1e-65 251.9 204 63.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.7e-65 251.1 214 63.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-64 250.8 200 64.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-64 250.8 200 64.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.5e-64 250.4 200 64.0
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 4.3e-64 248.8 200 63.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 4.3e-64 248.8 205 62.4
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.3e-63 247.3 189 68.3
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.8e-63 245.4 206 63.6
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.4e-62 243.0 214 59.3
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 6.9e-62 241.5 210 61.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.0e-61 240.0 194 64.9
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 5.9e-61 238.4 197 61.9
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 6.5e-60 235.0 200 59.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-59 234.2 201 60.2
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.4e-59 233.8 199 58.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.9e-59 233.4 200 58.0
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.5e-59 233.0 213 58.2
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.5e-59 233.0 201 60.2
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.2e-59 232.6 185 64.9
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.2e-59 232.3 200 58.5
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.2e-59 232.3 198 59.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 5.5e-59 231.9 200 60.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.6e-58 229.2 244 50.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 3.6e-58 229.2 196 61.2
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 4.6e-58 228.8 196 59.7
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 6.1e-58 228.4 198 58.6
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.9e-58 228.0 197 62.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 7.9e-58 228.0 203 59.1
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.0e-57 227.6 200 59.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.0e-57 226.1 205 59.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.7e-57 224.9 200 58.0
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.1e-56 224.2 180 62.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.7e-56 221.1 199 56.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.2e-55 219.9 197 59.9
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.7e-55 219.2 188 59.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.8e-54 216.9 212 54.7
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 2.4e-54 216.5 200 58.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.4e-54 216.5 198 60.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 3.1e-54 216.1 203 56.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 4.1e-54 215.7 188 58.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 9.1e-54 214.5 197 55.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.5e-53 213.8 204 54.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.0e-53 213.4 198 60.1
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.0e-53 213.4 200 53.5
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.6e-53 213.0 198 55.6
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-52 211.1 214 53.3
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.3e-52 210.7 200 54.0
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.7e-52 210.3 208 54.8
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.9e-52 209.5 210 52.9
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-51 207.2 207 54.6
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.5e-51 206.5 197 53.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.2e-51 206.1 216 56.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.2e-51 205.7 196 54.6
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.2e-51 204.9 216 55.6
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.2e-51 204.9 207 54.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.1e-50 203.4 198 52.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.6e-50 202.6 196 51.5
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.4e-49 200.7 197 53.3
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.4e-49 200.7 196 54.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.9e-49 199.1 197 53.3
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 5.1e-49 198.7 197 53.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.1e-49 198.7 197 51.8
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.1e-49 198.7 214 52.3
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.7e-49 198.4 223 46.6
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 6.7e-49 198.4 197 53.3
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 8.8e-49 198.0 206 53.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 8.8e-49 198.0 205 52.2
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 8.8e-49 198.0 197 53.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-48 197.6 203 50.2
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 5.7e-48 195.3 206 48.5
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.8e-47 192.2 122 78.7
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.8e-46 190.3 207 48.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-45 187.2 215 47.4
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.6e-45 187.2 196 48.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.6e-45 187.2 203 47.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 4.5e-45 185.7 216 46.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 4.5e-45 185.7 216 46.8
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 5.9e-45 185.3 214 47.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.3e-44 184.1 198 47.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.2e-44 183.3 196 45.9
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.2e-43 179.1 164 57.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.7e-42 176.4 238 43.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 3.6e-42 176.0 201 46.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.7e-42 175.6 210 43.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-41 174.1 185 48.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.4e-41 174.1 238 42.9
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.8e-41 173.7 202 45.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 5.2e-41 172.2 211 44.1
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 8.8e-41 171.4 196 46.9
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.3e-40 169.5 197 49.7
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.4e-40 169.1 196 45.4
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.3e-39 167.5 198 45.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.1e-38 164.5 207 46.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.1e-38 164.5 136 60.3
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.4e-38 164.1 209 44.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.1e-38 162.9 188 45.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 3.1e-38 162.9 206 43.7
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 3.1e-38 162.9 206 43.7
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 5.3e-38 162.2 205 44.4
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.2e-37 161.0 209 44.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.0e-36 157.9 210 42.4
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-35 153.7 206 41.7
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 5.5e-35 152.1 205 41.5
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 7.2e-35 151.8 151 53.0
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 2.1e-34 150.2 229 42.4
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 8.0e-34 148.3 86 83.7
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 5.2e-33 145.6 204 40.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.0e-32 143.7 122 59.0
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 5.7e-32 142.1 204 39.2
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 7.0e-30 135.2 70 94.3
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 7.0e-30 135.2 70 94.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.0e-29 133.7 70 95.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.9e-28 129.8 194 41.2
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 5.0e-28 129.0 202 39.6
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.2e-27 125.9 197 42.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 8.8e-25 118.2 204 33.3
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-24 117.5 204 33.8
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-24 117.5 204 33.8
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.5e-24 117.5 62 93.5
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.5e-24 117.5 62 95.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.4e-24 116.3 204 32.8
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 4.4e-24 115.9 197 36.0
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.1e-22 109.8 198 33.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 5.9e-21 105.5 199 35.7
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.7e-20 104.0 181 30.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 5.6e-19 99.0 198 30.3
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.8e-17 94.0 175 34.3
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.2e-16 91.3 182 31.9
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.2e-16 91.3 194 35.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 2.6e-16 90.1 183 30.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.7e-15 87.4 183 33.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.7e-12 77.4 177 33.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 3.3e-11 73.2 86 41.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.0e-09 66.2 140 27.1
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 8.9e-09 65.1 124 35.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.3e-07 61.2 95 31.6
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 1.4e-06 57.8 86 46.5
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.4e-06 57.8 44 56.8
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.0e-06 55.5 62 41.9


User provided reference genes

Program Settings