Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 5.8e-175 617.8 412 100.0
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 2.7e-172 609.0 412 96.4
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.1e-160 568.5 412 87.9
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 5.0e-118 428.7 374 73.8
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 8.0e-116 421.4 413 76.5
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.9e-113 412.9 417 70.3
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 2.0e-98 363.6 400 64.8
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.8e-57 226.5 475 40.8
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 1.1e-53 214.9 408 45.1
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 6.9e-51 205.7 392 37.0
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 8.5e-49 198.7 187 62.0
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 7.2e-48 195.7 387 41.6
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 7.2e-48 195.7 511 37.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.6e-47 194.5 438 40.2
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 2.7e-47 193.7 163 66.9
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.6e-47 193.4 396 39.6
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 4.6e-47 193.0 393 40.2
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 4.6e-47 193.0 439 35.8
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 6.1e-47 192.6 581 30.6
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 1.8e-46 191.0 414 46.6
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 5.1e-46 189.5 400 40.5
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.1e-45 188.3 396 38.6
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.5e-45 188.0 164 64.0
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 4.3e-45 186.4 470 38.1
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 7.4e-45 185.7 426 37.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 9.7e-45 185.3 362 50.8
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 3.7e-44 183.3 433 35.6
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 4.8e-44 183.0 163 64.4
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.4e-43 180.6 163 63.8
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 6.9e-43 179.1 474 34.0
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 6.9e-43 179.1 163 61.3
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.5e-42 177.9 394 38.1
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.6e-42 177.2 483 32.7
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 5.9e-42 176.0 181 58.0
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 7.7e-42 175.6 421 38.0
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 7.7e-42 175.6 422 35.1
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 7.7e-42 175.6 554 30.7
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.0e-41 175.3 176 58.0
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.3e-41 174.9 414 40.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.3e-41 174.9 386 37.0
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 1.7e-41 174.5 464 37.1
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 2.9e-41 173.7 417 35.3
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 5.0e-41 172.9 420 33.6
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 6.5e-41 172.6 162 59.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 8.5e-41 172.2 472 33.5
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.4e-40 171.4 473 33.4
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.9e-40 171.0 426 37.3
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 5.5e-40 169.5 208 52.4
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 9.4e-40 168.7 117 71.8
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 9.4e-40 168.7 407 34.2
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.6e-39 167.9 369 47.7
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 2.7e-39 167.2 187 53.5
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.7e-39 167.2 423 37.4
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 2.7e-39 167.2 166 57.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 6.1e-39 166.0 450 35.8
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 7.9e-39 165.6 488 32.4
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.0e-38 165.2 452 40.9
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.4e-38 164.9 114 72.8
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.8e-38 164.5 457 32.8
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 2.3e-38 164.1 387 38.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 3.0e-38 163.7 395 41.3
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 3.0e-38 163.7 364 39.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 5.1e-38 162.9 394 38.6
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 6.7e-38 162.5 396 39.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.1e-37 161.8 362 37.0
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 1.1e-37 161.8 415 36.9
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 2.6e-37 160.6 116 70.7
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 3.3e-37 160.2 87 87.4
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 9.7e-37 158.7 116 69.8
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 9.7e-37 158.7 163 58.9
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.3e-36 158.3 112 74.1
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 4.8e-36 156.4 463 35.6
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 1.4e-35 154.8 397 40.8
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 3.1e-35 153.7 184 53.8
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 4.1e-35 153.3 128 67.2
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 5.3e-35 152.9 585 28.7
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 6.9e-35 152.5 405 31.6
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.2e-34 151.8 490 32.0
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.5e-34 151.4 410 38.8
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 2.0e-34 151.0 103 71.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 2.0e-34 151.0 429 35.9
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 3.4e-34 150.2 450 32.7
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 7.7e-34 149.1 161 54.0
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.0e-33 148.7 425 39.3
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.2e-33 147.5 170 53.5
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.2e-33 147.5 165 55.2
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 2.9e-33 147.1 98 75.5
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 2.9e-33 147.1 407 42.8
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 6.5e-33 146.0 391 40.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.5e-33 145.6 414 43.0
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 1.4e-32 144.8 109 67.0
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 5.5e-32 142.9 124 64.5
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 5.5e-32 142.9 124 64.5
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 9.4e-32 142.1 435 34.7
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 1.6e-31 141.4 112 68.8
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 1.6e-31 141.4 112 68.8
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 1.6e-31 141.4 112 68.8
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.1e-31 141.0 153 50.3
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 2.7e-31 140.6 405 33.1
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.7e-31 139.8 162 51.2
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 7.9e-31 139.0 104 68.3
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 7.9e-31 139.0 104 68.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 7.9e-31 139.0 104 68.3
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.8e-30 137.9 512 33.0
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 6.7e-30 136.0 388 43.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 1.5e-29 134.8 407 35.1
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 8.2e-28 129.0 163 50.3
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.4e-27 128.3 152 47.4
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.4e-27 128.3 152 47.4
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 2.0e-26 124.4 102 59.8
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.7e-25 121.3 194 45.9
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.1e-24 118.6 101 62.4
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.1e-24 118.6 147 46.9
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-23 115.2 76 71.1
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 3.0e-22 110.5 151 45.0
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 8.8e-22 109.0 101 62.4
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.5e-21 108.2 97 60.8
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 5.7e-21 106.3 128 51.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.7e-21 106.3 128 51.6
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 3.7e-20 103.6 62 77.4
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 5.0e-17 93.2 554 28.7
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 2.1e-15 87.8 340 30.6
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 5.7e-13 79.7 109 49.5
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 1.7e-12 78.2 93 54.8
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 1.7e-12 78.2 420 26.9
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 9.1e-11 72.4 55 61.8
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 3.5e-10 70.5 80 55.0
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 4.2e-08 63.5 120 41.7
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 5.5e-08 63.2 34 85.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 5.5e-08 63.2 34 85.3
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.6e-07 61.6 349 30.9


User provided reference genes

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