Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 3.1e-82 308.5 168 100.0
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 7.4e-68 260.8 146 97.3
PGSC0003DMG400019894 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-60 236.9 151 88.7
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 2.1e-54 216.1 147 82.3
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 5.9e-41 171.4 148 74.3
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 5.9e-33 144.8 149 65.8
Nitab4.5_0006661g0030 Nicotiana tabacum HOM05D002758 ORTHO05D002885 6.3e-27 124.8 95 77.9
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.4e-26 122.9 149 57.0
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.2e-23 112.1 147 54.4
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 2.1e-22 109.8 148 53.4
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 3.6e-22 109.0 150 55.3
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 4.7e-22 108.6 148 54.7
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 4.0e-21 105.5 152 49.3
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 1.2e-20 104.0 147 51.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 2.0e-20 103.2 142 55.6
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 3.4e-20 102.4 149 49.7
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.2e-19 99.8 152 51.3
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 3.7e-19 99.0 147 46.3
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 3.7e-19 99.0 151 51.0
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 1.4e-18 97.1 158 46.8
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 1.8e-18 96.7 144 52.1
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.8e-18 96.7 147 48.3
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.4e-18 96.3 153 49.0
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.1e-18 95.9 154 48.7
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.1e-18 95.9 150 45.3
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 4.1e-18 95.5 154 50.6
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 7.0e-18 94.7 157 47.8
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 2.7e-17 92.8 149 51.7
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 3.5e-17 92.4 147 47.6
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 4.5e-17 92.0 158 48.7
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 7.7e-17 91.3 160 45.6
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 7.7e-17 91.3 152 46.1
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 1.3e-16 90.5 148 49.3
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.7e-16 90.1 153 49.0
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 2.3e-16 89.7 148 48.6
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 2.9e-16 89.4 155 45.8
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 2.9e-16 89.4 156 46.8
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.9e-16 89.4 143 49.7
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 3.8e-16 89.0 149 47.7
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.8e-16 89.0 147 47.6
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 6.6e-16 88.2 152 48.7
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 6.6e-16 88.2 157 46.5
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 6.6e-16 88.2 152 44.7
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 1.5e-15 87.0 143 42.7
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 1.9e-15 86.7 145 43.4
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.5e-15 86.3 145 48.3
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 4.3e-15 85.5 171 45.0
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 5.6e-15 85.1 152 47.4
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 5.6e-15 85.1 159 44.7
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 5.6e-15 85.1 156 45.5
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 1.6e-14 83.6 154 50.6
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 1.6e-14 83.6 164 42.7
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.6e-14 83.6 147 43.5
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.6e-14 83.6 150 49.3
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.6e-14 83.6 151 45.7
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 1.6e-14 83.6 145 42.8
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.1e-14 83.2 161 44.7
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 2.1e-14 83.2 151 43.7
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.8e-14 82.8 171 43.3
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.6e-14 82.4 150 42.0
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 3.6e-14 82.4 169 42.0
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 3.6e-14 82.4 150 46.7
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.7e-14 82.0 148 48.6
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 6.1e-14 81.6 157 44.6
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 8.0e-14 81.3 150 44.0
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.0e-13 80.9 150 48.7
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.0e-13 80.9 148 46.6
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 1.0e-13 80.9 150 45.3
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 1.4e-13 80.5 149 46.3
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.4e-13 80.5 148 45.3
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 1.4e-13 80.5 150 45.3
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 1.4e-13 80.5 151 44.4
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.4e-13 80.5 164 40.9
QL02p088621 Quercus lobata HOM05D002758 ORTHO05D002885 1.8e-13 80.1 152 41.4
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.3e-13 79.7 150 44.0
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 2.3e-13 79.7 148 44.6
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 2.3e-13 79.7 163 44.8
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 2.3e-13 79.7 151 45.7
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.0e-13 79.3 157 42.7
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.0e-13 79.0 154 46.1
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 4.0e-13 79.0 150 46.7
ECA240G3055 Erigeron canadensis HOM05D002758 ORTHO05D002885 6.8e-13 78.2 135 45.9
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 8.9e-13 77.8 150 46.7
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.2e-12 77.4 141 43.3
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.5e-12 77.0 159 43.4
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 1.5e-12 77.0 152 44.1
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 2.0e-12 76.6 152 45.4
MELO3C010338.2 Cucumis melo HOM05D002758 ORTHO05D002885 2.6e-12 76.3 149 40.3
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 3.4e-12 75.9 142 41.5
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.4e-12 75.9 147 43.5
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.4e-12 75.9 155 41.9
CiPaw.04G171600 Carya illinoinensis HOM05D002758 ORTHO05D002885 5.7e-12 75.1 148 43.2
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 5.7e-12 75.1 153 43.1
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 7.5e-12 74.7 149 42.3
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 7.5e-12 74.7 152 41.4
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 1.3e-11 73.9 144 45.1
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.7e-11 73.6 147 42.9
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 1.7e-11 73.6 153 40.5
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.7e-11 73.6 190 40.5
HanXRQChr09g0241961 Helianthus annuus HOM05D002758 ORTHO05D002885 2.2e-11 73.2 147 39.5
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.2e-11 73.2 146 40.4
CsaV3_1G030210 Cucumis sativus L. HOM05D002758 ORTHO05D002885 2.9e-11 72.8 148 39.2
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 2.9e-11 72.8 152 41.4
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 2.9e-11 72.8 152 41.4
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 3.7e-11 72.4 156 42.3
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 4.9e-11 72.0 146 38.4
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-11 72.0 153 39.9
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-11 72.0 153 39.9
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 6.4e-11 71.6 158 42.4
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 6.4e-11 71.6 150 44.0
PGR142G4319 Punica granatum HOM05D002758 ORTHO05D002885 6.4e-11 71.6 181 42.0
Haze_25567 Corylus avellana HOM05D002758 ORTHO05D002885 8.3e-11 71.2 157 40.8
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 8.3e-11 71.2 150 40.0
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 1.1e-10 70.9 148 41.9
Cfa003385 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.4e-10 70.5 152 41.4
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.4e-10 70.5 153 39.2
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 1.4e-10 70.5 157 41.4
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.4e-10 70.5 136 41.2
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.4e-10 69.7 152 39.5
Migut.K00449 Erythranthe guttata HOM05D002758 ORTHO05D002885 7.0e-10 68.2 153 41.2
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 9.2e-10 67.8 151 38.4
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 9.2e-10 67.8 142 40.1
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 9.2e-10 67.8 160 39.4
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.2e-09 67.4 155 40.6
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 2.0e-09 66.6 150 40.7
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 2.0e-09 66.6 141 40.4
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 3.5e-09 65.9 148 41.9
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.5e-09 65.9 141 36.2
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.5e-09 65.9 152 38.8
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 4.6e-09 65.5 157 39.5
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 5.9e-09 65.1 149 41.6
Cpa.g.sc46.5 Carica papaya HOM05D002758 ORTHO05D002885 5.9e-09 65.1 184 38.0
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 5.9e-09 65.1 149 40.3
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 5.9e-09 65.1 156 40.4
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.0e-08 64.3 153 38.6
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 1.0e-08 64.3 146 41.8
THA.LOC104808985 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.0e-08 64.3 147 38.8
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.7e-08 63.5 147 41.5
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.3e-08 63.2 152 40.1
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 2.3e-08 63.2 161 37.9
COL.COLO4_35114 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.9e-08 62.4 144 39.6
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 3.9e-08 62.4 154 42.2
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 5.0e-08 62.0 146 36.3
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 5.0e-08 62.0 147 43.5
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.6e-08 61.6 146 34.9
TWI63G1461 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 6.6e-08 61.6 143 42.0
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.1e-07 60.8 152 34.2
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.5e-07 60.5 149 36.9
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.5e-07 60.5 149 37.6
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 2.5e-07 59.7 150 37.3
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.5e-07 59.7 146 34.2
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 3.3e-07 59.3 147 40.8
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 4.3e-07 58.9 144 38.2
CDE04G0331 Ceratophyllum demersum HOM05D002758 ORTHO05D002885 5.6e-07 58.5 143 35.0
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 5.6e-07 58.5 160 37.5
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 7.3e-07 58.2 144 38.2
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 7.3e-07 58.2 144 40.3
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 9.5e-07 57.8 83 44.6
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.2e-06 57.4 140 37.9
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.2e-06 57.4 137 33.6
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 2.1e-06 56.6 139 38.8
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.1e-06 56.6 140 39.3
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.8e-06 56.2 138 34.8
Atru.chr7.1142 Acer truncatum HOM05D002758 ORTHO05D002885 3.6e-06 55.8 94 50.0
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 3.6e-06 55.8 143 38.5
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 3.6e-06 55.8 104 48.1
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 3.6e-06 55.8 138 35.5
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 4.7e-06 55.5 154 37.7
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 4.7e-06 55.5 147 34.7
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 6.2e-06 55.1 143 35.7
FAN09G3789 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.0e-06 54.7 73 47.9


User provided reference genes

Program Settings