Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 3.2e-119 431.8 222 100.0
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 5.6e-116 421.0 217 100.0
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 3.4e-113 411.8 217 98.2
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.9e-111 406.0 217 97.2
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 3.5e-110 401.7 216 94.9
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.4e-98 363.2 222 86.9
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 1.5e-97 359.8 222 85.1
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 2.0e-97 359.4 222 85.1
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 3.4e-97 358.6 222 85.1
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 1.0e-96 357.1 222 85.1
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 1.7e-96 356.3 223 84.3
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.7e-96 356.3 223 84.3
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 2.9e-96 355.5 223 83.9
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 8.5e-96 354.0 221 84.6
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.5e-95 352.4 222 83.8
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 2.5e-95 352.4 222 84.7
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 2.5e-95 352.4 222 83.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 3.2e-95 352.1 222 83.8
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 7.2e-95 350.9 223 82.1
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 3.6e-94 348.6 222 82.9
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 4.6e-94 348.2 221 81.9
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 4.6e-94 348.2 221 83.3
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.6e-94 348.2 221 83.3
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.6e-94 348.2 221 83.3
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 7.9e-94 347.4 222 82.9
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 7.9e-94 347.4 221 84.2
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 7.9e-94 347.4 223 82.1
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 7.9e-94 347.4 222 82.9
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.0e-93 347.1 222 82.4
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.8e-93 346.3 221 82.8
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 3.0e-93 345.5 221 81.9
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 1.1e-92 343.6 222 82.4
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 1.1e-92 343.6 222 79.7
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 2.5e-92 342.4 220 80.0
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 2.5e-92 342.4 222 82.0
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 2.5e-92 342.4 226 79.6
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 3.3e-92 342.0 222 81.5
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.7e-92 341.3 221 80.5
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 7.4e-92 340.9 218 83.5
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 9.7e-92 340.5 219 82.6
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 1.3e-91 340.1 225 80.0
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 1.3e-91 340.1 235 79.1
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 1.7e-91 339.7 221 79.6
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 1.7e-91 339.7 222 81.5
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 2.2e-91 339.3 220 81.4
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.8e-91 339.0 222 82.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.8e-91 339.0 222 82.0
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 2.8e-91 339.0 222 80.2
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.8e-91 339.0 223 80.3
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 2.8e-91 339.0 223 80.3
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 3.7e-91 338.6 219 79.9
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 4.8e-91 338.2 223 79.8
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 4.8e-91 338.2 222 78.4
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 6.3e-91 337.8 222 78.4
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 6.3e-91 337.8 221 79.6
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 2.4e-90 335.9 222 81.5
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 3.1e-90 335.5 222 81.1
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 3.1e-90 335.5 222 80.2
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 4.1e-90 335.1 223 80.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 5.3e-90 334.7 222 80.2
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 5.3e-90 334.7 222 80.6
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 5.3e-90 334.7 222 81.5
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.5e-89 333.2 223 79.8
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 4.5e-89 331.6 222 80.2
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 5.9e-89 331.3 222 77.0
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 7.7e-89 330.9 222 77.0
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 1.0e-88 330.5 222 79.3
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 1.7e-88 329.7 222 79.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 1.7e-88 329.7 222 79.3
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.7e-88 329.7 226 80.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 1.7e-88 329.7 221 78.7
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 6.5e-88 327.8 219 77.2
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 8.5e-88 327.4 222 77.0
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.9e-87 326.2 221 76.5
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 2.5e-87 325.9 224 78.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 2.5e-87 325.9 222 79.3
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 7.2e-87 324.3 218 77.1
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 4.7e-86 321.6 221 78.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 1.0e-85 320.5 222 75.7
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 3.9e-85 318.5 223 75.8
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 6.7e-85 317.8 217 75.6
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 8.8e-85 317.4 221 75.1
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 2.0e-84 316.2 220 75.5
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 3.3e-84 315.5 222 74.3
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.3e-83 313.5 225 73.8
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 1.3e-83 313.5 225 75.6
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 2.8e-83 312.4 222 72.5
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 2.8e-83 312.4 222 72.5
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 3.7e-83 312.0 225 73.3
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 3.7e-83 312.0 222 73.4
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 3.7e-83 312.0 223 76.7
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 4.8e-83 311.6 222 73.0
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 8.2e-83 310.8 223 71.3
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 8.2e-83 310.8 221 73.3
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.1e-82 310.5 222 75.7
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.1e-82 310.5 224 72.3
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.8e-82 309.7 220 72.7
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.1e-82 308.9 223 72.2
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 1.2e-81 307.0 223 74.0
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.5e-81 305.4 218 73.9
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-79 299.7 198 81.3
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.5e-79 299.3 197 81.7
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.6e-78 296.6 231 69.3
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.1e-78 296.2 189 84.7
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.7e-78 295.8 223 71.7
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 1.8e-77 293.1 222 72.1
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 1.5e-76 290.0 225 69.3
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 2.2e-75 286.2 228 68.9
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 6.3e-75 284.6 215 72.1
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 2.5e-71 272.7 218 71.6
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 2.7e-70 269.2 213 67.1
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 4.7e-70 268.5 211 67.8
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 6.1e-70 268.1 213 67.1
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 8.0e-70 267.7 214 67.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 8.0e-70 267.7 214 65.4
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 8.0e-70 267.7 214 65.4
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 2.0e-68 263.1 214 65.0
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 2.0e-68 263.1 214 65.0
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 2.0e-68 263.1 214 65.0
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 5.7e-68 261.5 214 65.4
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.4e-66 256.9 230 61.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.4e-66 256.9 222 63.5
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.2e-65 253.8 213 64.8
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.1e-62 243.0 264 53.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 2.3e-61 239.6 231 58.9
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 1.8e-58 229.9 218 60.1
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.9e-55 219.9 208 60.1
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 3.7e-51 205.7 157 67.5
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 9.2e-50 201.1 126 81.7
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 2.7e-49 199.5 222 55.9
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 7.3e-47 191.4 126 81.7
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.3e-39 166.0 104 85.6
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 6.2e-38 161.8 117 70.9
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.7e-35 153.7 232 44.4
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.6e-22 110.5 79 78.5
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 4.7e-22 109.0 125 51.2
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 4.2e-18 95.9 75 70.7
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 9.3e-18 94.7 86 59.3
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 3.5e-17 92.8 92 53.3
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 6.6e-16 88.6 76 67.1
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.5e-15 86.7 160 42.5
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 3.0e-08 63.2 32 93.8


User provided reference genes

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