Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 0.0e+00 2161.7 1098 100.0
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 0.0e+00 2106.6 1098 97.7
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 0.0e+00 2043.5 1098 94.5
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 0.0e+00 1751.9 1107 81.6
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 0.0e+00 1673.7 1100 78.3
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 0.0e+00 1649.8 976 86.5
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 0.0e+00 1619.8 1106 76.6
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 1.0e-279 967.2 1118 48.6
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 8.8e-279 964.1 1148 48.3
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 2.4e-276 956.1 1194 46.6
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 4.0e-271 938.7 1132 46.2
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 1.8e-263 913.3 1133 47.1
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 5.2e-263 911.8 1162 45.9
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 3.2e-260 902.5 1133 47.0
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 2.7e-259 899.4 1149 45.7
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.6e-256 890.2 1121 46.9
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 2.9e-253 879.4 1143 45.1
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 1.6e-251 873.6 1091 46.2
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 4.6e-251 872.1 1128 44.8
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 2.1e-248 863.2 1147 45.2
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 1.4e-247 860.5 1155 43.7
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 8.9e-247 857.8 1232 42.7
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 2.9e-245 852.8 1136 43.7
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 3.0e-242 842.8 1250 41.8
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 8.6e-242 841.3 1107 44.2
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 1.1e-241 840.9 1132 43.7
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 1.2e-240 837.4 1153 42.7
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.8e-239 833.6 1153 42.8
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.5e-238 830.5 1147 42.8
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.3e-237 827.4 1148 42.5
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 2.9e-237 826.2 1149 42.0
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.6e-235 820.5 1126 43.3
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 4.6e-235 818.9 1096 43.7
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 3.0e-234 816.2 1126 43.3
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 6.6e-234 815.1 1146 43.0
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 7.3e-233 811.6 1131 43.9
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 7.3e-233 811.6 1131 43.6
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 4.0e-231 805.8 1128 43.4
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 9.0e-231 804.7 1137 42.8
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 2.9e-229 799.7 1136 43.4
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 3.2e-228 796.2 1109 43.1
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 2.7e-227 793.1 1118 42.0
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 5.1e-226 788.9 1090 42.8
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 8.7e-226 788.1 1157 42.3
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 3.3e-225 786.2 1157 41.1
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 1.4e-223 780.8 1134 42.2
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 3.1e-223 779.6 1139 42.3
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 1.0e-218 764.6 1133 41.5
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.9e-217 760.4 1026 43.3
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 1.9e-217 760.4 1138 41.3
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.7e-213 747.3 1138 39.9
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 5.0e-205 719.2 1137 38.6
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 1.4e-204 717.6 979 43.6
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 6.3e-200 702.2 1143 38.5
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 7.2e-188 662.1 855 45.3
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 2.8e-184 650.2 1114 37.4
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 1.3e-181 641.3 850 44.6
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 1.1e-180 638.3 1010 39.5
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 5.4e-167 592.8 756 45.1
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.7e-165 587.8 927 39.6
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 4.0e-162 576.6 889 39.8
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 5.2e-162 576.2 685 45.8
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 3.1e-159 567.0 861 40.4
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 2.8e-155 553.9 1031 35.8
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 1.7e-149 534.6 1084 37.0
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 1.7e-144 518.1 903 37.0
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 5.4e-143 513.1 852 38.8
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 7.0e-143 512.7 1112 33.9
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 7.0e-143 512.7 1115 32.1
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 6.6e-141 506.1 666 43.4
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.3e-138 497.7 1121 33.6
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.0e-137 494.6 1211 30.5
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 7.1e-119 433.0 993 30.7
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 3.4e-113 414.1 861 34.3
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 2.6e-97 361.3 407 47.9
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 5.5e-95 353.6 305 59.0
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 3.9e-93 347.4 205 86.8
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.2e-81 309.3 309 52.4
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 2.0e-73 282.0 908 27.9
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.5e-68 265.8 257 57.2
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.2e-65 256.1 1100 25.1
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.6e-65 255.8 262 52.7
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 4.0e-61 241.1 418 36.8
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 2.2e-59 235.3 326 44.8
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 7.7e-57 226.9 232 54.7
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.9e-56 224.9 258 51.6
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.8e-53 215.7 422 32.5
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.5e-47 195.3 216 51.4
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.1e-42 179.9 440 30.5
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.8e-42 179.1 155 58.1
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.8e-42 179.1 155 58.1
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 5.4e-42 177.6 432 29.6
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 2.2e-35 155.6 168 50.0
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.6e-33 149.4 220 43.6
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 2.3e-32 145.6 162 48.1
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 8.6e-32 143.7 113 64.6
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.4e-29 136.3 462 25.3
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 3.2e-26 125.2 165 45.5
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 3.3e-23 115.2 85 63.5
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 3.0e-16 92.0 92 54.3
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 7.3e-15 87.4 265 29.1


User provided reference genes

Program Settings