Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 0.0e+00 1426.4 711 100.0
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 0.0e+00 1393.3 728 96.3
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 0.0e+00 1307.0 729 90.0
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 0.0e+00 1245.7 694 89.3
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 0.0e+00 1221.5 689 88.1
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 0.0e+00 1084.7 615 87.5
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1075.8 737 72.3
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.2e-305 1052.7 730 70.8
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 7.4e-303 1043.5 719 72.0
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 7.4e-303 1043.5 719 72.0
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 6.3e-302 1040.4 727 69.9
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 4.1e-301 1037.7 731 69.4
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 7.7e-300 1033.5 723 69.7
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 5.2e-296 1020.8 731 68.8
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 3.3e-295 1018.1 723 69.3
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 1.3e-294 1016.1 731 68.5
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 2.2e-294 1015.4 723 69.0
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.4e-293 1011.9 723 68.7
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 3.1e-293 1011.5 723 69.8
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 5.0e-291 1004.2 713 70.1
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 4.2e-290 1001.1 726 68.6
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 8.8e-288 993.4 722 68.6
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 9.7e-287 989.9 721 66.3
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 3.7e-286 988.0 721 67.7
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 2.4e-285 985.3 723 67.1
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 4.5e-284 981.1 719 67.3
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 5.9e-284 980.7 711 66.8
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 1.0e-283 979.9 732 66.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 1.7e-283 979.2 728 66.1
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 8.5e-283 976.9 723 67.8
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 1.1e-282 976.5 699 68.0
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 7.2e-282 973.8 709 66.3
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 6.1e-281 970.7 711 67.7
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.5e-279 963.8 728 65.1
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 9.8e-279 963.4 728 65.1
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 4.8e-278 961.1 728 64.8
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.3e-278 960.3 728 64.8
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 8.3e-278 960.3 716 66.1
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 1.1e-277 959.9 719 65.6
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 2.0e-276 955.7 718 66.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.0e-276 955.7 711 67.4
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 3.5e-276 954.9 728 65.5
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 4.5e-276 954.5 711 67.4
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.7e-276 953.7 723 64.7
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 1.0e-275 953.4 707 66.1
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 1.0e-275 953.4 712 66.3
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 4.2e-274 948.0 722 65.5
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 4.2e-274 948.0 680 68.2
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 8.0e-273 943.7 728 64.0
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 8.9e-272 940.3 592 77.2
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 2.0e-271 939.1 714 66.1
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 3.4e-271 938.3 720 64.7
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 4.4e-271 937.9 723 65.4
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 4.4e-271 937.9 716 64.5
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.3e-270 936.4 721 63.7
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 1.1e-269 933.3 721 63.2
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 7.8e-268 927.2 716 63.8
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 1.7e-267 926.0 712 64.0
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 9.5e-266 920.2 717 63.7
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 1.2e-265 919.8 731 63.9
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 3.6e-265 918.3 729 62.7
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 6.1e-265 917.5 735 63.3
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.0e-264 916.8 729 62.6
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 5.2e-264 914.4 721 63.2
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 8.9e-264 913.7 724 63.5
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 6.0e-260 901.0 783 60.3
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.7e-259 899.4 694 64.7
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 6.6e-259 897.5 688 65.1
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 8.6e-259 897.1 729 63.2
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 8.3e-254 880.6 841 54.9
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.4e-247 858.6 717 61.9
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 3.5e-244 848.6 721 60.9
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 4.6e-244 848.2 711 61.6
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.9e-243 845.1 729 60.1
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.5e-239 833.2 549 73.0
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 3.8e-238 828.6 709 58.7
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.7e-235 819.7 712 57.7
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.7e-235 819.7 724 57.3
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 5.1e-235 818.1 712 58.1
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 8.7e-235 817.4 608 65.3
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 4.3e-234 815.1 709 58.3
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 4.3e-234 815.1 709 58.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 2.8e-233 812.4 715 58.7
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 2.4e-232 809.3 714 58.3
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 3.1e-232 808.9 713 57.5
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 5.3e-232 808.1 713 57.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 2.7e-220 769.2 726 55.5
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 4.3e-218 761.9 662 59.2
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.5e-215 753.4 623 60.7
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 5.3e-208 728.4 732 54.5
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 3.7e-193 679.1 456 72.8
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.8e-192 676.8 473 70.2
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 9.4e-189 664.5 610 55.9
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.7e-188 662.1 473 68.3
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.4e-187 660.6 721 49.7
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.6e-178 629.8 479 62.6
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 1.6e-172 610.5 467 64.0
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 8.0e-172 608.2 468 64.1
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.5e-162 577.4 743 44.8
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 1.4e-160 570.9 736 42.9
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.9e-158 563.1 464 61.0
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 8.9e-155 551.6 449 64.1
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 4.6e-151 539.3 422 63.7
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 5.9e-151 538.9 392 67.3
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 2.9e-145 520.0 413 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 8.1e-140 501.9 672 42.0
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 1.1e-123 448.4 670 41.0
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 1.6e-119 434.5 748 36.8
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 4.6e-119 433.0 381 58.0
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.5e-114 417.9 370 59.2
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.1e-112 411.8 738 36.9
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.6e-108 397.9 296 66.6
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.8e-99 367.9 327 57.5
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 1.1e-93 348.6 308 57.5
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.2e-81 307.8 184 81.0
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.3e-78 297.7 228 64.5
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.5e-69 268.5 208 61.5
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.0e-54 219.2 114 91.2
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 9.5e-48 196.1 315 40.0
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 9.2e-43 179.5 142 67.6
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 3.7e-36 157.5 98 74.5
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 7.3e-32 143.3 539 26.5
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 7.3e-32 143.3 150 52.0
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.0e-31 139.8 144 51.4
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 4.0e-30 137.5 140 50.0
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.9e-30 136.3 268 36.2
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 4.4e-29 134.0 159 47.8
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 7.0e-27 126.7 579 24.0
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 3.0e-25 121.3 144 44.4
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.7e-20 104.4 84 59.5
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.9e-19 102.1 74 64.9
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 5.4e-19 100.5 63 71.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.1e-19 100.1 86 57.0
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 8.6e-17 93.2 121 52.1
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-15 89.0 127 44.9
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.9e-12 78.2 51 76.5
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.1e-11 76.3 55 67.3
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.4e-11 75.9 55 63.6
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 4.1e-11 74.3 59 66.1
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 3.5e-10 71.2 56 67.9
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 2.5e-08 65.1 46 60.9
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.6e-07 62.4 97 37.1


User provided reference genes

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