Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 1.2e-236 822.8 401 100.0
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 1.2e-233 812.8 401 98.8
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 1.1e-226 789.6 401 95.5
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 5.8e-188 661.0 405 79.3
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 4.2e-154 548.5 292 88.4
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.4e-149 532.7 403 63.5
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 7.0e-149 531.2 402 63.2
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 2.2e-147 526.2 271 89.7
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 2.2e-147 526.2 399 66.2
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 2.0e-143 513.1 416 61.5
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 1.1e-138 497.3 417 59.5
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 7.3e-138 494.6 402 62.9
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.6e-135 486.1 399 61.4
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 9.8e-135 484.2 414 60.1
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 1.3e-134 483.8 405 60.0
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 1.3e-134 483.8 395 61.5
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 3.7e-134 482.3 418 56.9
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 4.9e-134 481.9 394 61.4
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 1.1e-133 480.7 411 60.3
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 3.2e-133 479.2 329 67.2
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 4.1e-133 478.8 374 63.6
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 1.2e-132 477.2 410 60.0
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 2.0e-132 476.5 401 57.9
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 7.8e-132 474.6 404 59.7
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 3.0e-131 472.6 409 59.7
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.0e-131 472.6 420 56.7
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 5.0e-131 471.9 408 57.6
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 1.1e-130 470.7 419 57.5
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 7.3e-130 468.0 404 59.9
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 1.2e-129 467.2 407 57.5
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.4e-128 463.8 401 58.9
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 2.3e-128 463.0 403 57.6
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 5.2e-128 461.8 391 58.6
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 8.9e-128 461.1 399 59.4
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.0e-127 459.9 399 59.1
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 5.8e-127 458.4 402 58.7
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 7.5e-127 458.0 399 55.6
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 9.8e-127 457.6 401 57.9
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 9.8e-127 457.6 401 58.4
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 1.3e-126 457.2 406 56.2
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 2.9e-126 456.1 390 58.7
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 2.9e-126 456.1 357 60.5
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 3.2e-125 452.6 347 62.0
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 5.4e-125 451.8 407 57.2
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 5.4e-125 451.8 387 58.4
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 5.4e-125 451.8 402 57.0
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.6e-124 450.3 405 58.0
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 7.8e-124 448.0 404 57.7
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 1.0e-123 447.6 412 55.6
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 1.0e-123 447.6 404 56.7
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 1.3e-123 447.2 409 56.0
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 3.0e-123 446.0 402 56.5
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 5.0e-123 445.3 403 55.6
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 8.6e-123 444.5 319 64.6
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 8.6e-123 444.5 405 57.3
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 1.1e-122 444.1 400 56.8
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 1.5e-122 443.7 306 66.0
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.8e-121 439.5 302 67.5
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 1.1e-120 437.6 406 56.4
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 3.1e-120 436.0 428 54.2
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 7.5e-119 431.4 408 55.4
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 1.3e-118 430.6 392 56.6
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 1.7e-118 430.3 366 58.5
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 2.2e-118 429.9 313 66.1
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 2.9e-118 429.5 411 55.2
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 8.3e-118 427.9 380 56.8
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 2.4e-117 426.4 400 55.2
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.4e-117 426.4 366 58.5
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 3.2e-117 426.0 328 59.8
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 2.1e-116 423.3 328 60.7
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 7.8e-116 421.4 328 60.4
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 3.0e-115 419.5 359 57.7
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 8.6e-115 417.9 328 60.4
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 4.3e-114 415.6 326 60.1
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 3.6e-113 412.5 380 54.2
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 4.7e-113 412.1 400 53.8
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 4.7e-113 412.1 400 54.2
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 8.1e-113 411.4 351 57.5
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 1.1e-112 411.0 325 59.7
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 1.1e-112 411.0 325 59.7
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 1.1e-112 411.0 325 59.7
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 1.8e-112 410.2 331 59.2
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 1.8e-112 410.2 249 75.1
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 1.5e-111 407.1 406 51.7
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 2.0e-111 406.8 324 59.6
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 7.8e-108 394.8 321 60.1
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 1.0e-107 394.4 383 52.2
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.3e-107 394.0 314 58.0
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 2.8e-105 386.3 245 71.8
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 2.6e-103 379.8 358 54.7
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 9.9e-103 377.9 285 60.7
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 3.9e-99 365.9 403 49.9
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 1.3e-94 350.9 214 74.8
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 5.1e-91 339.0 329 53.2
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 1.1e-88 331.3 406 46.6
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 1.1e-69 268.1 402 41.3
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 9.3e-69 265.0 402 39.8
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 7.7e-63 245.4 149 72.5
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 8.2e-57 225.3 300 37.3
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 3.3e-50 203.4 371 34.0
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 2.2e-49 200.7 298 37.6
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 7.7e-47 192.2 119 73.1
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 3.8e-46 189.9 206 47.6
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 2.5e-45 187.2 131 69.5
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 2.5e-45 187.2 131 69.5
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 2.0e-42 177.6 270 35.6
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 7.7e-39 165.6 203 43.3
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 5.2e-35 152.9 199 44.7
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 9.8e-34 148.7 157 49.7
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 3.5e-31 140.2 97 72.2
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 8.6e-30 135.6 313 30.0
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 4.2e-29 133.3 155 45.2
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 1.6e-23 114.8 207 33.8
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 1.1e-11 75.5 212 29.2
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 3.4e-10 70.5 94 46.8
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 4.4e-10 70.1 92 47.8


User provided reference genes

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