Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.5e-112 409.5 198 100.0
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 2.5e-107 392.1 191 99.5
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 1.4e-94 349.7 179 94.4
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 2.9e-87 325.5 179 88.3
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.1e-82 309.3 179 83.2
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 4.5e-72 275.0 168 81.0
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 3.4e-56 222.2 179 64.2
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 5.0e-55 218.4 179 62.6
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 7.2e-54 214.5 179 62.6
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 1.5e-51 206.8 181 58.0
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.5e-51 206.8 170 61.2
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 7.4e-51 204.5 177 59.9
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 5.3e-49 198.4 170 60.6
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.2e-48 197.2 177 56.5
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.2e-48 197.2 180 57.2
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.5e-48 196.8 177 55.9
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 2.6e-48 196.1 170 57.6
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.9e-48 194.9 119 83.2
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 5.9e-48 194.9 179 55.9
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 7.7e-48 194.5 179 56.4
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 1.0e-47 194.1 179 57.0
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.0e-47 194.1 179 59.2
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 5.0e-47 191.8 170 58.2
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.5e-46 189.5 170 58.2
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 4.2e-46 188.7 183 53.6
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 5.5e-46 188.3 169 57.4
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.2e-46 188.0 169 57.4
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.2e-46 188.0 169 57.4
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 9.4e-46 187.6 169 57.4
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 9.4e-46 187.6 169 57.4
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.6e-45 186.8 169 56.8
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.1e-45 186.4 169 56.8
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 3.6e-45 185.7 170 56.5
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 3.6e-45 185.7 169 56.8
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 3.6e-45 185.7 169 57.4
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 4.6e-45 185.3 169 56.2
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 6.1e-45 184.9 170 55.9
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 7.9e-45 184.5 164 59.1
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 7.9e-45 184.5 171 60.2
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 1.0e-44 184.1 179 55.3
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 1.0e-44 184.1 170 57.6
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 1.0e-44 184.1 168 56.0
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.4e-44 183.7 169 56.2
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 1.8e-44 183.3 170 57.1
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.8e-44 183.3 169 57.4
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.8e-44 183.3 170 55.9
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 2.3e-44 183.0 170 57.1
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 2.3e-44 183.0 169 57.4
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 3.0e-44 182.6 172 57.6
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 3.9e-44 182.2 170 55.3
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.9e-44 182.2 170 56.5
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 3.9e-44 182.2 169 55.6
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 5.1e-44 181.8 169 56.8
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 5.1e-44 181.8 176 57.4
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 6.7e-44 181.4 170 55.9
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.8e-44 181.0 169 56.2
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 8.8e-44 181.0 168 56.0
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 8.8e-44 181.0 170 54.1
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 8.8e-44 181.0 170 54.1
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 8.8e-44 181.0 182 53.8
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 1.1e-43 180.6 170 57.1
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 1.1e-43 180.6 170 57.1
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 1.5e-43 180.3 179 52.0
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.5e-43 180.3 170 56.5
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 1.5e-43 180.3 170 56.5
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 1.5e-43 180.3 177 54.8
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.0e-43 179.9 170 55.9
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 2.0e-43 179.9 170 56.5
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 2.5e-43 179.5 170 57.1
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 2.5e-43 179.5 169 55.0
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 2.5e-43 179.5 170 55.9
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 2.5e-43 179.5 170 56.5
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 2.5e-43 179.5 170 57.1
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.5e-43 179.5 170 55.9
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 3.3e-43 179.1 170 55.9
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 3.3e-43 179.1 171 56.1
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 4.3e-43 178.7 177 50.8
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 5.7e-43 178.3 169 53.8
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 5.7e-43 178.3 171 53.2
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 5.7e-43 178.3 170 56.5
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 7.4e-43 177.9 170 54.1
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 9.7e-43 177.6 178 55.6
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 9.7e-43 177.6 170 57.6
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.3e-42 177.2 177 54.8
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 1.7e-42 176.8 170 55.3
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 1.7e-42 176.8 170 54.7
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 1.7e-42 176.8 176 55.1
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 2.2e-42 176.4 179 52.5
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.2e-42 176.4 170 54.1
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 2.8e-42 176.0 169 55.6
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 2.8e-42 176.0 180 55.6
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 3.7e-42 175.6 170 55.9
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.8e-42 175.3 169 55.0
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.8e-42 175.3 169 55.0
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.8e-42 175.3 170 55.3
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 8.2e-42 174.5 169 52.7
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 8.2e-42 174.5 169 54.4
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 8.2e-42 174.5 170 53.5
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 1.1e-41 174.1 178 52.8
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 1.1e-41 174.1 171 55.6
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 1.4e-41 173.7 170 51.2
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 1.8e-41 173.3 170 54.7
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 1.8e-41 173.3 164 57.3
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 2.4e-41 172.9 171 52.0
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 2.4e-41 172.9 164 53.7
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 3.1e-41 172.6 172 55.8
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 4.1e-41 172.2 179 47.5
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 6.9e-41 171.4 171 55.6
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 6.9e-41 171.4 171 55.6
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 6.9e-41 171.4 177 52.0
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 1.2e-40 170.6 168 51.8
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.5e-40 170.2 171 54.4
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.5e-40 170.2 174 50.0
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 2.0e-40 169.9 174 52.9
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 2.0e-40 169.9 170 52.9
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 2.0e-40 169.9 180 51.7
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 2.6e-40 169.5 178 53.4
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 3.4e-40 169.1 170 52.4
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 3.4e-40 169.1 169 52.1
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 4.5e-40 168.7 179 51.4
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 5.9e-40 168.3 174 50.6
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 7.7e-40 167.9 172 50.0
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 1.0e-39 167.5 171 51.5
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.0e-39 167.5 171 52.6
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.0e-39 167.5 173 53.8
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 1.0e-39 167.5 170 55.3
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.3e-39 167.2 170 51.8
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 1.3e-39 167.2 170 52.9
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 1.7e-39 166.8 174 51.7
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 1.7e-39 166.8 170 52.9
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 1.7e-39 166.8 170 52.9
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 2.9e-39 166.0 169 50.9
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 3.8e-39 165.6 174 49.4
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 5.0e-39 165.2 179 49.7
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 8.5e-39 164.5 162 55.6
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 1.1e-38 164.1 174 50.0
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 1.1e-38 164.1 174 50.0
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 1.4e-38 163.7 170 51.2
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 1.9e-38 163.3 170 51.2
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 2.5e-38 162.9 171 52.6
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.5e-38 162.9 170 52.4
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.5e-38 162.9 170 50.6
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 3.2e-38 162.5 171 50.3
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 3.2e-38 162.5 171 51.5
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 7.2e-38 161.4 172 52.3
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 9.4e-38 161.0 171 51.5
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.2e-37 160.6 173 52.0
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 2.1e-37 159.8 177 49.2
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 2.7e-37 159.5 178 48.9
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 1.0e-36 157.5 176 48.3
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 3.0e-36 156.0 171 51.5
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 5.7e-35 151.8 174 48.9
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.8e-33 146.7 173 44.5
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 2.4e-33 146.4 168 47.0
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.0e-31 141.0 175 45.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 8.5e-31 137.9 127 56.7
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 8.5e-31 137.9 177 49.2
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 1.6e-29 133.7 170 42.4
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 3.0e-28 129.4 152 48.0
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 7.5e-27 124.8 177 42.9
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 1.3e-26 124.0 129 48.1
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 2.8e-26 122.9 67 88.1
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 8.2e-26 121.3 178 39.3
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 1.1e-25 120.9 194 39.7
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 2.0e-24 116.7 104 56.7
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 2.9e-23 112.8 137 45.3
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 6.5e-23 111.7 172 37.8
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 2.5e-22 109.8 103 54.4
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 6.1e-21 105.1 95 58.9
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 6.1e-21 105.1 172 34.9
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 8.0e-21 104.8 179 33.0
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 3.0e-20 102.8 130 43.1
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 3.0e-20 102.8 130 43.1
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 1.8e-12 77.0 65 56.9
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 3.4e-11 72.8 121 41.3
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 3.7e-10 69.3 121 45.5
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 2.3e-07 60.1 47 66.0
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 1.9e-06 57.0 46 63.0
RcHm_v2.0_Chr1g0325881 Rosa chinensis HOM05D003361 ORTHO05D003760 4.3e-06 55.8 64 46.9


User provided reference genes

Program Settings