Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007400.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.0e-55 218.4 121 100.0
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 8.6e-34 147.1 108 70.4
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 2.5e-33 145.6 108 68.5
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 5.2e-31 137.9 108 65.7
FAN10G3145 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.4e-30 134.8 108 64.8
FAN06G3182 Fragaria x ananassa HOM05D003361 ORTHO05D003760 6.4e-29 131.0 112 63.4
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 7.0e-28 127.5 108 63.0
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 2.8e-24 115.5 88 78.4
Duzib150G0604 Durio zibethinus HOM05D003361 ORTHO05D003760 3.6e-24 115.2 89 69.7
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 4.7e-24 114.8 90 67.8
FAN06G4763 Fragaria x ananassa HOM05D003361 ORTHO05D003760 6.2e-24 114.4 94 63.8
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 6.2e-24 114.4 89 79.8
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.0e-23 113.6 89 68.5
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 1.4e-23 113.2 88 69.3
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 1.4e-23 113.2 92 66.3
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.3e-23 112.5 89 65.2
CAN.G551.67 Capsicum annuum HOM05D003361 ORTHO05D003760 3.1e-23 112.1 90 65.6
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 4.0e-23 111.7 90 66.7
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 6.8e-23 110.9 88 68.2
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.9e-23 110.5 102 61.8
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 1.2e-22 110.2 92 64.1
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 7.5e-22 107.5 84 75.0
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 9.8e-22 107.1 86 66.3
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.3e-21 106.7 90 63.3
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.7e-21 106.3 85 65.9
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 2.9e-21 105.5 117 57.3
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 3.7e-21 105.1 84 69.0
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 4.9e-21 104.8 88 63.6
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 6.4e-21 104.4 89 61.8
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.4e-20 103.2 89 70.8
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 2.4e-20 102.4 81 66.7
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 3.2e-20 102.1 85 61.2
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.2e-20 102.1 79 67.1
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 4.1e-20 101.7 82 64.6
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 7.0e-20 100.9 84 65.5
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 7.0e-20 100.9 82 63.4
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.2e-19 100.1 90 66.7
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.2e-19 100.1 81 64.2
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 1.2e-19 100.1 89 68.5
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 2.0e-19 99.4 81 63.0
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 2.0e-19 99.4 81 63.0
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 2.0e-19 99.4 84 63.1
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 2.7e-19 99.0 85 64.7
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 2.7e-19 99.0 81 63.0
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 2.7e-19 99.0 81 63.0
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 2.7e-19 99.0 81 63.0
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 2.7e-19 99.0 81 63.0
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 3.5e-19 98.6 86 67.4
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 3.5e-19 98.6 89 59.6
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 3.5e-19 98.6 84 63.1
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 6.0e-19 97.8 89 59.6
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 6.0e-19 97.8 82 61.0
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 1.0e-18 97.1 84 61.9
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 1.0e-18 97.1 84 61.9
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 1.0e-18 97.1 85 60.0
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.0e-18 97.1 88 61.4
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 1.3e-18 96.7 85 58.8
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.7e-18 96.3 81 60.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 1.7e-18 96.3 82 63.4
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 2.3e-18 95.9 79 59.5
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 2.3e-18 95.9 82 63.4
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 3.0e-18 95.5 89 68.5
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 3.9e-18 95.1 79 63.3
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 6.6e-18 94.4 82 62.2
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 6.6e-18 94.4 78 59.0
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 6.6e-18 94.4 82 58.5
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.1e-17 93.6 76 61.8
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.9e-17 92.8 82 58.5
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.9e-17 92.8 84 60.7
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.3e-17 92.0 86 58.1
Medtr4g009870 Medicago truncatula HOM05D003361 ORTHO05D003760 9.5e-17 90.5 80 63.8
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 9.5e-17 90.5 89 68.5
Haze_16606 Corylus avellana HOM05D003361 ORTHO05D003760 1.6e-16 89.7 81 59.3
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 2.8e-16 89.0 93 62.4
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 3.6e-16 88.6 80 58.8
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 4.7e-16 88.2 84 56.0
FvH4_7g04581 Fragaria vesca HOM05D003361 ORTHO05D003760 1.1e-15 87.0 73 60.3
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 1.8e-15 86.3 88 62.5
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 3.1e-15 85.5 77 63.6
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.0e-15 85.1 82 67.1
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 6.8e-15 84.3 82 63.4
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 8.9e-15 84.0 89 53.9
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 2.0e-14 82.8 79 55.7
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 2.0e-14 82.8 80 58.8
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 3.4e-14 82.0 85 54.1
FAN10G2861 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.5e-14 80.9 67 61.2
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 9.8e-14 80.5 82 53.7
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 9.8e-14 80.5 100 47.0
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.3e-13 80.1 68 63.2
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 2.2e-13 79.3 79 53.2
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 3.7e-13 78.6 90 50.0
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 3.2e-12 75.5 81 50.6
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.1e-12 75.1 89 49.4
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.1e-12 75.1 89 49.4
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 9.2e-12 73.9 88 50.0
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 1.2e-11 73.6 83 50.6
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 1.2e-11 73.6 82 52.4
Nitab4.5_0000070g0310 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.7e-11 72.4 48 77.1
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 7.8e-11 70.9 85 54.1
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 1.0e-10 70.5 82 58.5
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 1.7e-10 69.7 83 59.0
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.9e-10 68.6 89 46.1
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 8.6e-10 67.4 81 59.3
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 8.6e-10 67.4 81 59.3
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 3.3e-09 65.5 81 46.9
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 4.3e-09 65.1 78 57.7
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 7.3e-09 64.3 82 56.1
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 9.5e-09 63.9 80 46.2
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 9.5e-09 63.9 83 50.6
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.2e-08 63.5 82 43.9
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.2e-08 63.5 82 56.1
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 1.2e-08 63.5 82 46.3
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.2e-08 63.5 82 56.1
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 1.6e-08 63.2 85 52.9
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.6e-08 63.2 85 50.6
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 1.6e-08 63.2 89 51.7
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 6.2e-08 61.2 79 49.4
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 6.2e-08 61.2 78 44.9
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.1e-07 60.5 88 46.6
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.4e-07 60.1 80 55.0
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.4e-07 60.1 78 46.2
SHI02099 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-07 60.1 43 65.1
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 2.3e-07 59.3 80 48.8
HPP92_027277 Vanilla planifolia HOM05D003361 ORTHO05D003760 2.3e-07 59.3 84 44.0
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 3.1e-07 58.9 81 44.4
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 5.2e-07 58.2 90 50.0
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 5.2e-07 58.2 90 50.0
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 5.2e-07 58.2 82 42.7
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 6.8e-07 57.8 81 43.2
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 8.9e-07 57.4 85 42.4
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 1.2e-06 57.0 85 42.4
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 1.2e-06 57.0 82 47.6
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-06 57.0 79 53.2
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-06 57.0 79 53.2
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 2.0e-06 56.2 81 42.0
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 2.0e-06 56.2 85 41.2
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 3.4e-06 55.5 79 51.9
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 3.4e-06 55.5 80 42.5
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.4e-06 55.1 79 51.9
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 4.4e-06 55.1 82 41.5
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 5.8e-06 54.7 85 41.2
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 7.6e-06 54.3 82 40.2
VMungo0459G0001 Vigna mungo HOM05D003361 ORTHO05D003760 7.6e-06 54.3 77 41.6
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 9.9e-06 53.9 79 40.5
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 9.9e-06 53.9 82 50.0


User provided reference genes

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