Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 3.1e-54 214.9 111 100.0
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 3.8e-52 208.0 111 96.4
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 4.9e-52 207.6 111 97.3
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 7.3e-48 193.7 109 91.7
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 7.8e-42 173.7 111 82.0
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 7.3e-40 167.2 109 79.8
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 1.5e-29 132.9 110 65.5
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.9e-27 125.9 95 70.5
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 3.2e-27 125.2 95 70.5
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.2e-27 125.2 95 70.5
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 4.2e-27 124.8 95 70.5
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.8e-20 101.7 98 57.1
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 1.4e-19 99.8 95 62.1
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 1.9e-19 99.4 95 61.1
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 4.2e-19 98.2 111 52.3
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 7.1e-19 97.4 96 59.4
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.6e-18 96.3 96 61.5
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.7e-18 95.5 106 54.7
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 3.5e-18 95.1 96 57.3
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 4.6e-18 94.7 109 52.3
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 1.0e-17 93.6 100 57.0
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.3e-17 93.2 95 58.9
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 1.8e-17 92.8 97 54.6
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.3e-17 92.4 96 60.4
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.3e-17 92.4 96 60.4
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 3.0e-17 92.0 109 56.0
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 3.0e-17 92.0 102 56.9
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 5.1e-17 91.3 95 55.8
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 5.1e-17 91.3 94 61.7
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 6.7e-17 90.9 95 57.9
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 8.7e-17 90.5 96 60.4
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 8.7e-17 90.5 95 54.7
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.1e-16 90.1 97 56.7
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 1.5e-16 89.7 96 55.2
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.5e-16 89.0 109 48.6
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.5e-16 89.0 94 54.3
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 4.3e-16 88.2 98 57.1
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 4.3e-16 88.2 98 57.1
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 4.3e-16 88.2 98 57.1
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 7.4e-16 87.4 95 52.6
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 7.4e-16 87.4 103 54.4
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 1.3e-15 86.7 95 57.9
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 1.3e-15 86.7 98 56.1
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.2e-15 85.9 95 54.7
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 3.7e-15 85.1 105 49.5
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 6.3e-15 84.3 95 54.7
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.4e-14 83.2 94 53.2
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.4e-14 83.2 95 54.7
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.8e-14 82.8 95 53.7
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 1.8e-14 82.8 101 52.5
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.4e-14 82.4 97 54.6
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 3.1e-14 82.0 105 47.6
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 3.1e-14 82.0 94 51.1
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 4.1e-14 81.6 97 53.6
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 5.3e-14 81.3 96 53.1
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.3e-14 81.3 96 54.2
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.3e-14 81.3 96 54.2
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 9.0e-14 80.5 96 51.0
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.2e-13 80.1 112 50.0
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 1.2e-13 80.1 106 49.1
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 1.5e-13 79.7 95 50.5
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 1.5e-13 79.7 95 53.7
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.0e-13 79.3 96 51.0
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 2.0e-13 79.3 94 48.9
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 2.0e-13 79.3 102 50.0
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 2.6e-13 79.0 95 49.5
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.4e-13 78.6 96 51.0
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 4.5e-13 78.2 122 46.7
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 7.6e-13 77.4 103 49.5
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 7.6e-13 77.4 103 49.5
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 1.0e-12 77.0 94 55.3
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 1.3e-12 76.6 96 51.0
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.2e-12 75.9 99 49.5
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 3.8e-12 75.1 93 51.6
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 5.0e-12 74.7 97 49.5
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 6.5e-12 74.3 93 51.6
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 8.5e-12 73.9 95 49.5
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 2.5e-11 72.4 95 47.4
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 5.5e-11 71.2 96 49.0
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 1.6e-10 69.7 83 54.2
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 1.6e-10 69.7 106 44.3
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 1.6e-10 69.7 99 51.5
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 2.1e-10 69.3 98 43.9
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 2.1e-10 69.3 90 51.1
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 2.7e-10 68.9 102 47.1
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 2.7e-10 68.9 109 45.9
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 3.6e-10 68.6 96 47.9
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 6.1e-10 67.8 94 50.0
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 7.9e-10 67.4 105 46.7
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 98 52.0
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 1.0e-09 67.0 116 44.0
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 102 45.1
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.0e-09 67.0 98 45.9
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.0e-09 67.0 100 45.0
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.0e-09 67.0 100 45.0
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 1.4e-09 66.6 96 46.9
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 2.3e-09 65.9 95 49.5
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 3.0e-09 65.5 106 46.2
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 5.1e-09 64.7 94 43.6
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 6.7e-09 64.3 104 46.2
TPR.G15775 Trifolium pratense HOM05D003638 ORTHO05D003202 6.7e-09 64.3 108 45.4
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 8.8e-09 63.9 93 46.2
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.1e-08 63.5 90 47.8
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 1.1e-08 63.5 102 45.1
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-08 63.5 102 45.1
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-08 63.5 102 45.1
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 1.1e-08 63.5 102 45.1
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 1.1e-08 63.5 102 45.1
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 1.1e-08 63.5 116 42.2
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 1.5e-08 63.2 111 44.1
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 1.5e-08 63.2 93 46.2
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 2.5e-08 62.4 104 43.3
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 2.5e-08 62.4 103 48.5
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 2.5e-08 62.4 102 45.1
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 2.5e-08 62.4 102 45.1
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.5e-08 62.4 104 43.3
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 3.3e-08 62.0 107 43.9
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 4.3e-08 61.6 95 46.3
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 4.3e-08 61.6 103 47.6
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 5.7e-08 61.2 100 41.0
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 5.7e-08 61.2 100 41.0
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 7.4e-08 60.8 97 46.4
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 9.7e-08 60.5 117 41.0
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 9.7e-08 60.5 94 46.8
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 1.3e-07 60.1 107 43.9
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 1.3e-07 60.1 94 46.8
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 1.3e-07 60.1 94 46.8
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 1.3e-07 60.1 112 41.1
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 1.7e-07 59.7 94 46.8
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 1.7e-07 59.7 94 46.8
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 2.2e-07 59.3 111 44.1
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 2.2e-07 59.3 98 45.9
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 3.7e-07 58.5 116 41.4
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 8.2e-07 57.4 94 45.7
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 8.2e-07 57.4 94 45.7
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 1.1e-06 57.0 94 45.7
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 1.4e-06 56.6 94 43.6
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 1.8e-06 56.2 93 43.0
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 2.4e-06 55.8 103 41.7
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 3.1e-06 55.5 98 43.9
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 4.1e-06 55.1 104 41.3
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 4.1e-06 55.1 56 55.4
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 4.1e-06 55.1 62 53.2
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 6.9e-06 54.3 53 58.5


User provided reference genes

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