Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.2e-46 188.0 88 100.0
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 3.2e-46 188.0 88 100.0
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 9.6e-35 149.8 88 84.1
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 4.3e-27 124.4 77 76.6
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 7.4e-27 123.6 88 64.8
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 7.4e-27 123.6 88 63.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.3e-26 122.9 91 65.9
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 3.1e-25 118.2 88 62.5
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 9.0e-25 116.7 92 60.9
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.2e-24 116.3 89 62.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.5e-24 115.9 91 57.1
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.5e-24 114.4 92 64.1
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.5e-24 114.4 92 64.1
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.5e-24 114.4 92 64.1
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.3e-23 112.8 91 58.2
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.7e-23 112.5 98 58.2
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.4e-23 110.2 95 57.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-22 109.8 86 60.5
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.4e-22 109.4 88 65.9
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.4e-22 109.4 96 54.2
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.9e-22 109.0 96 53.1
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.9e-22 109.0 91 57.1
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.5e-22 108.6 97 56.7
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.2e-22 108.2 89 56.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.2e-22 108.2 89 56.2
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.2e-21 106.3 98 56.1
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.7e-21 105.1 96 54.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.7e-21 105.1 93 53.8
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.7e-21 105.1 93 54.8
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.5e-21 104.8 93 53.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.5e-21 104.8 88 55.7
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 4.6e-21 104.4 96 55.2
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 4.6e-21 104.4 90 60.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 4.6e-21 104.4 90 60.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.6e-21 104.4 93 53.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 7.9e-21 103.6 93 53.8
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.0e-20 103.2 93 52.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-20 102.8 95 56.8
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-20 102.4 85 57.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-20 102.4 88 60.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.9e-20 101.3 106 52.8
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.1e-20 100.9 60 75.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 5.1e-20 100.9 98 53.1
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 6.7e-20 100.5 90 54.4
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.1e-19 99.8 90 55.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.1e-19 99.8 90 55.6
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-19 99.8 99 58.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-19 99.8 94 59.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-19 99.8 91 54.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.5e-19 99.4 88 55.7
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.5e-19 98.6 92 55.4
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.3e-19 98.2 93 52.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.3e-19 97.8 95 51.6
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.3e-19 97.8 95 51.6
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 5.7e-19 97.4 93 53.8
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.7e-19 97.4 92 54.3
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 9.7e-19 96.7 90 52.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.6e-18 95.9 93 58.1
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.6e-18 95.9 93 53.8
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 2.2e-18 95.5 88 48.9
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.2e-18 95.5 93 59.1
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.2e-18 95.5 90 55.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-18 94.7 91 54.9
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.3e-18 94.0 93 52.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 8.2e-18 93.6 92 53.3
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-17 92.8 93 50.5
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.8e-17 92.4 92 58.7
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.8e-17 92.4 92 58.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.8e-17 92.4 91 49.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.4e-17 92.0 92 54.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.1e-17 91.7 95 51.6
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 6.9e-17 90.5 63 69.8
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 9.0e-17 90.1 94 51.1
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 9.0e-17 90.1 89 52.8
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-16 89.7 95 52.6
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 3.4e-16 88.2 91 53.8
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.5e-16 87.8 97 53.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.5e-16 87.8 91 49.5
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 5.9e-16 87.4 92 48.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 7.7e-16 87.0 104 48.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.0e-15 86.7 96 53.1
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.0e-15 86.7 97 52.6
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.0e-15 86.7 90 51.1
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.7e-15 85.9 96 47.9
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-15 85.9 92 53.3
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 2.2e-15 85.5 79 54.4
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.9e-15 85.1 86 47.7
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.8e-15 84.7 89 51.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 5.0e-15 84.3 106 47.2
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 6.5e-15 84.0 89 50.6
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.5e-15 84.0 106 47.2
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.1e-14 83.2 93 44.1
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-14 82.8 95 50.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.5e-14 82.0 88 47.7
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.5e-14 82.0 88 47.7
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.5e-14 82.0 98 51.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.5e-14 82.0 87 49.4
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 3.2e-14 81.6 79 55.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.2e-14 80.5 86 47.7
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 7.2e-14 80.5 88 46.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 7.2e-14 80.5 88 46.6
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 7.2e-14 80.5 88 46.6
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 9.4e-14 80.1 97 51.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 9.4e-14 80.1 80 45.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.1e-13 79.0 91 47.3
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.1e-13 79.0 99 48.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.7e-13 78.6 96 45.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.6e-13 78.2 86 44.2
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.6e-13 77.8 92 45.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.6e-13 77.8 87 46.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.6e-13 77.8 76 46.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.0e-12 76.6 94 54.3
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.8e-12 75.9 86 45.3
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.3e-12 75.5 97 47.4
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 5.1e-12 74.3 91 41.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 5.1e-12 74.3 94 41.5
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.7e-12 73.9 99 43.4
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 6.7e-12 73.9 87 48.3
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 6.7e-12 73.9 87 48.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 6.7e-12 73.9 87 48.3
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.7e-12 73.9 86 45.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.8e-12 73.6 99 46.5
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.8e-12 73.6 99 46.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.5e-11 72.0 86 44.2
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 5.7e-11 70.9 93 41.9
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 7.4e-11 70.5 86 45.3
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 7.4e-11 70.5 87 47.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 7.4e-11 70.5 87 47.1
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.7e-11 70.1 91 42.9
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 9.7e-11 70.1 75 41.3
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.7e-10 69.3 91 40.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.2e-10 68.9 77 42.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.8e-10 68.6 86 41.9
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 8.2e-10 67.0 76 42.1
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-08 63.2 86 41.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.5e-08 62.8 88 42.0
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.6e-08 62.0 56 50.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.5e-08 61.2 87 40.2
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 5.9e-08 60.8 91 37.4
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.0e-07 60.1 87 39.1
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.7e-07 59.3 90 41.1
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-07 58.9 90 42.2
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.8e-07 58.2 93 36.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 6.5e-07 57.4 61 47.5
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 7.2e-06 53.9 58 50.0
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 9.4e-06 53.5 85 40.0


User provided reference genes

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