Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 7.4e-151 537.3 304 100.0
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.9e-45 187.2 310 41.0
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 3.8e-38 162.9 307 38.1
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.5e-36 156.4 313 38.7
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.5e-36 156.4 313 38.7
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.8e-35 154.1 324 35.2
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.3e-34 149.8 300 38.7
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 4.5e-31 139.4 309 35.0
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-30 137.9 255 39.6
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.9e-30 136.7 297 33.3
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 8.5e-30 135.2 313 36.1
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.4e-29 134.4 312 31.4
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-29 133.7 282 38.3
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-29 133.7 282 38.3
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 3.2e-29 133.3 310 35.8
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 4.2e-29 132.9 321 36.4
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.2e-28 131.3 309 35.0
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.6e-28 131.0 307 34.2
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 7.9e-28 128.6 312 36.5
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.0e-27 128.3 312 35.3
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 3.9e-27 126.3 253 36.8
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 8.8e-27 125.2 306 34.0
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 8.8e-27 125.2 304 34.9
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.3e-26 123.2 310 34.2
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 3.3e-26 123.2 311 33.4
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 1.3e-25 121.3 133 54.9
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.7e-25 120.9 313 33.9
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 3.7e-25 119.8 310 33.9
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-24 118.2 308 33.4
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.4e-24 117.9 308 33.1
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 3.1e-24 116.7 296 32.8
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 6.9e-24 115.5 311 32.2
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.2e-23 114.8 303 33.0
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.5e-23 114.4 308 32.5
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.0e-23 114.0 308 33.1
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.5e-23 112.8 325 32.0
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.0e-22 111.7 306 29.1
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.3e-22 111.3 325 32.0
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.7e-22 110.9 308 31.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.7e-22 110.9 303 31.0
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 5.0e-22 109.4 307 32.6
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.9e-21 107.5 291 35.4
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.9e-21 107.5 301 32.2
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.2e-21 106.3 308 30.2
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 5.5e-21 105.9 292 36.3
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 7.2e-21 105.5 350 30.6
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.1e-20 104.0 299 34.1
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 2.7e-20 103.6 314 31.8
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.0e-19 101.7 311 31.5
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.1e-19 99.4 301 31.6
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.7e-19 99.0 307 32.2
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.1e-18 98.2 300 29.7
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-18 98.2 307 32.9
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.5e-18 97.8 293 31.7
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.5e-18 97.8 306 29.7
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.3e-17 94.7 291 30.2
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.3e-17 94.7 293 29.7
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.7e-17 94.4 299 32.4
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.3e-17 92.4 303 28.4
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.3e-17 92.4 287 30.7
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.1e-16 89.7 243 32.5
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.2e-15 88.2 304 29.6
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 2.0e-15 87.4 309 26.9
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 2.6e-15 87.0 378 29.4
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 4.5e-15 86.3 321 31.8
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.5e-15 86.3 296 28.7
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.5e-15 86.3 297 29.3
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.9e-15 85.9 308 31.5
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.7e-15 85.5 306 29.4
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 1.3e-14 84.7 228 32.0
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 4.2e-13 79.7 119 42.9
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.5e-13 79.3 298 29.2
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.6e-12 77.8 307 29.0
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 2.1e-12 77.4 312 26.9
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 2.1e-12 77.4 312 26.9
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 2.7e-12 77.0 323 27.9
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.7e-12 77.0 305 27.9
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.7e-12 77.0 305 27.9
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.1e-12 75.9 304 27.0
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 8.0e-12 75.5 293 26.3
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 8.0e-12 75.5 235 31.5
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.0e-11 75.1 313 27.8
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 1.0e-11 75.1 246 31.3
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.4e-11 74.7 311 27.7
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.4e-11 74.7 309 29.1
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.8e-11 74.3 304 29.9
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 8.8e-11 72.0 235 28.9
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.1e-10 71.6 294 29.6
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.5e-10 71.2 302 27.5
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 1.5e-10 71.2 310 28.4
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.5e-10 71.2 238 28.6
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 2.0e-10 70.9 312 26.0
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.0e-10 70.9 309 27.2
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.6e-10 70.5 312 25.6
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 2.6e-10 70.5 235 28.5
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.6e-10 70.5 312 25.6
SalBow6G6841 Salvia bowleyana HOM05D015143 ORTHO05D004696 2.6e-10 70.5 300 29.3
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.3e-10 70.1 282 28.4
SalBow6G3434 Salvia bowleyana HOM05D015143 ORTHO05D004696 3.3e-10 70.1 305 29.5
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 5.7e-10 69.3 312 25.6
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 5.7e-10 69.3 312 25.6
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.7e-10 69.3 300 26.3
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 5.7e-10 69.3 285 28.8
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 7.5e-10 68.9 312 25.3
CDE04G1275 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 9.7e-10 68.6 272 27.9
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 9.7e-10 68.6 296 28.7
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.3e-09 68.2 278 28.4
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.2e-09 67.4 300 26.0
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 2.2e-09 67.4 290 24.1
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 2.8e-09 67.0 256 30.1
SalBow6G5998 Salvia bowleyana HOM05D050058 ORTHO05D004696 2.8e-09 67.0 296 28.4
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.7e-09 66.6 306 25.2
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 3.7e-09 66.6 301 27.6
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 3.7e-09 66.6 303 27.1
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 4.8e-09 66.2 300 25.7
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 8.2e-09 65.5 111 36.0
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 8.2e-09 65.5 293 25.6
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-08 65.1 319 26.3
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.8e-08 64.3 230 27.4
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 2.4e-08 63.9 301 26.9
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-08 63.9 299 27.8
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.1e-08 63.5 301 26.2
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 3.1e-08 63.5 319 27.0
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 4.1e-08 63.2 224 31.7
Oeu050117.1 Olea europaea HOM05D001062 ORTHO05D000884 4.1e-08 63.2 293 29.0
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.3e-08 62.8 303 28.7
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 7.0e-08 62.4 287 27.5
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 7.0e-08 62.4 297 26.3
ClCG08G002820 Citrullus lanatus HOM05D001062 ORTHO05D000884 7.0e-08 62.4 218 30.7
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.1e-08 62.0 296 27.4
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.2e-07 61.6 319 26.0
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 1.2e-07 61.6 285 27.4
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.6e-07 61.2 285 27.0
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 2.0e-07 60.8 214 31.8
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.0e-07 60.8 294 25.9
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 2.0e-07 60.8 294 25.9
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 2.0e-07 60.8 308 23.7
Migut.H00697 Erythranthe guttata HOM05D001062 ORTHO05D000884 2.7e-07 60.5 295 28.1
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 2.7e-07 60.5 294 25.9
Lsat_1_v5_gn_6_97761 Lactuca sativa HOM05D001062 ORTHO05D000884 5.9e-07 59.3 211 32.7
Oeu033667.1 Olea europaea HOM05D001062 ORTHO05D000884 5.9e-07 59.3 297 27.9
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-06 58.2 322 26.1
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 1.3e-06 58.2 322 26.1
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-06 58.2 232 26.3
Lalb_Chr25g0281621 Lupinus albus HOM05D001062 ORTHO05D000884 1.7e-06 57.8 300 29.0
Medtr1g029440 Medicago truncatula HOM05D001062 ORTHO05D000884 2.2e-06 57.4 312 31.1
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 2.9e-06 57.0 301 26.9
Cc10_g12610 Coffea canephora HOM05D001062 ORTHO05D000884 2.9e-06 57.0 298 25.8
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.9e-06 57.0 293 25.3
Oeu042298.1 Olea europaea HOM05D001062 ORTHO05D000884 2.9e-06 57.0 296 26.0
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 2.9e-06 57.0 299 28.4
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 5.0e-06 56.2 297 25.6
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 6.5e-06 55.8 307 24.8
Sc06g0003000 Simmondsia chinensis HOM05D001062 ORTHO05D000884 6.5e-06 55.8 292 28.8


User provided reference genes

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