Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006395.2 Solanum lycopersicum HOM05D000852 ORTHO05D000657 6.9e-63 243.8 125 100.0
Sopen07g002490 Solanum pennellii HOM05D000852 ORTHO05D000657 6.1e-59 230.7 125 93.6
PGSC0003DMG400041852 Solanum tuberosum HOM05D000852 ORTHO05D000657 2.1e-51 205.7 121 85.1
CAN.G584.59 Capsicum annuum HOM05D000852 ORTHO05D000657 4.7e-43 177.9 121 72.7
CAN.G1618.1 Capsicum annuum HOM05D000852 ORTHO05D000657 2.2e-40 169.1 119 70.6
Nitab4.5_0004017g0020 Nicotiana tabacum HOM05D000852 ORTHO05D000657 2.3e-21 105.9 119 55.5
Nitab4.5_0004847g0010 Nicotiana tabacum HOM05D000852 ORTHO05D000657 1.9e-20 102.8 118 53.4
Nitab4.5_0005404g0020 Nicotiana tabacum HOM05D000852 ORTHO05D000657 2.1e-19 99.4 105 56.2
Nitab4.5_0003765g0010 Nicotiana tabacum HOM05D000852 ORTHO05D000657 2.3e-18 95.9 123 56.1
Nitab4.5_0000505g0090 Nicotiana tabacum HOM05D000852 ORTHO05D000657 5.2e-18 94.7 122 55.7
Nitab4.5_0011660g0010 Nicotiana tabacum HOM05D000852 ORTHO05D000657 6.8e-18 94.4 122 55.7
Nitab4.5_0000008g0520 Nicotiana tabacum HOM05D000852 ORTHO05D000657 1.5e-17 93.2 122 54.9
Nitab4.5_0000008g0550 Nicotiana tabacum HOM05D000852 ORTHO05D000657 3.4e-17 92.0 113 56.6
Solyc07g006390.3 Solanum lycopersicum HOM05D000852 ORTHO05D000657 7.5e-17 90.9 122 55.7
Sopen07g002480 Solanum pennellii HOM05D000852 ORTHO05D000657 1.7e-16 89.7 131 51.1
PGSC0003DMG400011227 Solanum tuberosum HOM05D000852 ORTHO05D000657 1.7e-16 89.7 127 51.2
Peaxi162Scf00841g00039 Petunia axillaris HOM05D000852 ORTHO05D000657 2.9e-16 89.0 122 50.8
Nitab4.5_0000008g0540 Nicotiana tabacum HOM05D000852 ORTHO05D000657 2.1e-14 82.8 127 50.4
Actinidia07323 Actinidia chinensis HOM05D000852 ORTHO05D000657 2.7e-14 82.4 126 46.0
TWI34G0196 Tripterygium wilfordii HOM05D000852 ORTHO05D000657 3.5e-14 82.0 124 46.0
Migut.J01425 Erythranthe guttata HOM05D000852 ORTHO05D000657 3.0e-13 79.0 125 46.4
Nitab4.5_0004847g0070 Nicotiana tabacum HOM05D000852 ORTHO05D000657 5.1e-13 78.2 88 51.1
TWI34G1963 Tripterygium wilfordii HOM05D000852 ORTHO05D000657 6.6e-13 77.8 122 42.6
Gorai.010G157700 Gossypium raimondii HOM05D000852 ORTHO05D000657 2.5e-12 75.9 125 43.2
SalBow6G4877 Salvia bowleyana HOM05D000852 ORTHO05D000657 3.3e-12 75.5 112 47.3
Gohir.A06G133402 Gossypium hirsutum HOM05D000852 ORTHO05D000657 5.6e-12 74.7 125 42.4
SalBow6G2111 Salvia bowleyana HOM05D000852 ORTHO05D000657 5.6e-12 74.7 110 48.2
Ciclev10010346m.g Citrus clementina HOM05D000852 ORTHO05D000657 7.3e-12 74.3 130 41.5
Gohir.A12G080033 Gossypium hirsutum HOM05D000852 ORTHO05D000657 1.6e-11 73.2 130 42.3
Peaxi162Scf00384g00036 Petunia axillaris HOM05D000852 ORTHO05D000657 1.6e-11 73.2 121 44.6
Dinv42779 Davidia involucrata HOM05D000852 ORTHO05D000657 2.8e-11 72.4 124 44.4
Dinv43322 Davidia involucrata HOM05D000852 ORTHO05D000657 2.8e-11 72.4 124 44.4
Potri.006G176300 Populus trichocarpa HOM05D000852 ORTHO05D000657 2.8e-11 72.4 117 44.4
Gorai.008G081700 Gossypium raimondii HOM05D000852 ORTHO05D000657 4.7e-11 71.6 128 40.6
Thhalv10026568m.g Eutrema salsugineum HOM05D000852 ORTHO05D000657 6.2e-11 71.2 117 44.4
Nitab4.5_0004017g0040 Nicotiana tabacum HOM05D000852 ORTHO05D000657 8.1e-11 70.9 121 43.8
Dinv42775 Davidia involucrata HOM05D000852 ORTHO05D000657 1.8e-10 69.7 122 44.3
Dinv43326 Davidia involucrata HOM05D000852 ORTHO05D000657 1.8e-10 69.7 122 44.3
Gohir.D12G073801 Gossypium hirsutum HOM05D000852 ORTHO05D000657 1.8e-10 69.7 128 39.8
HanXRQChr03g0067761 Helianthus annuus HOM05D000852 ORTHO05D000657 1.8e-10 69.7 124 40.3
Os09g0472900 Oryza sativa ssp. japonica HOM05D000852 ORTHO05D000657 1.8e-10 69.7 135 40.7
A01p07780 Brassica napus HOM05D000852 ORTHO05D000657 3.1e-10 68.9 117 42.7
BraA01t00722Z Brassica rapa HOM05D000852 ORTHO05D000657 3.1e-10 68.9 117 42.7
Cpa.g.sc75.13 Carica papaya HOM05D000852 ORTHO05D000657 3.1e-10 68.9 117 42.7
HanXRQChr03g0065891 Helianthus annuus HOM05D000852 ORTHO05D000657 3.1e-10 68.9 126 38.1
CANSAT11G0287 Cannabis sativa HOM05D000852 ORTHO05D000657 4.0e-10 68.6 132 37.9
Haze_22161 Corylus avellana HOM05D000852 ORTHO05D000657 4.0e-10 68.6 123 40.7
Os09g0472700 Oryza sativa ssp. japonica HOM05D000852 ORTHO05D000657 4.0e-10 68.6 116 39.7
RcHm_v2.0_Chr7g0222801 Rosa chinensis HOM05D000852 ORTHO05D000657 4.0e-10 68.6 126 40.5
Prupe.1G096900 Prunus persica HOM05D000852 ORTHO05D000657 5.2e-10 68.2 126 42.1
COL.COLO4_16050 Corchorus olitorius HOM05D000852 ORTHO05D000657 6.8e-10 67.8 130 39.2
FvH4_4g09540 Fragaria vesca HOM05D000852 ORTHO05D000657 6.8e-10 67.8 121 41.3
C01p08670 Brassica napus HOM05D000852 ORTHO05D000657 8.9e-10 67.4 117 42.7
Gohir.D12G073800 Gossypium hirsutum HOM05D000852 ORTHO05D000657 8.9e-10 67.4 129 40.3
Prupe.1G096800 Prunus persica HOM05D000852 ORTHO05D000657 8.9e-10 67.4 126 41.3
Thecc.09G162100 Theobroma cacao HOM05D000852 ORTHO05D000657 8.9e-10 67.4 132 38.6
CiPaw.08G039900 Carya illinoinensis HOM05D000852 ORTHO05D000657 1.2e-09 67.0 126 41.3
AUR62039967 Chenopodium quinoa HOM05D000852 ORTHO05D000657 1.2e-09 67.0 126 41.3
Carub.0007s1022 Capsella rubella HOM05D000852 ORTHO05D000657 1.5e-09 66.6 121 42.1
MD02G1013800 Malus domestica HOM05D000852 ORTHO05D000657 1.5e-09 66.6 137 40.9
AT4G30380 Arabidopsis thaliana HOM05D000852 ORTHO05D000657 2.6e-09 65.9 128 41.4
CiPaw.08G039800 Carya illinoinensis HOM05D000852 ORTHO05D000657 2.6e-09 65.9 126 39.7
Eucgr.B02703 Eucalyptus grandis HOM05D000852 ORTHO05D000657 2.6e-09 65.9 126 37.3
Sp7g28250 Schrenkiella parvula HOM05D000852 ORTHO05D000657 2.6e-09 65.9 117 42.7
BcaC09g51828 Brassica carinata HOM05D000852 ORTHO05D000657 3.4e-09 65.5 128 41.4
BolC1t00849H Brassica oleracea HOM05D000852 ORTHO05D000657 3.4e-09 65.5 128 41.4
CSS0009715 Camellia sinensis var. sinensis HOM05D000852 ORTHO05D000657 3.4e-09 65.5 120 37.5
Cc06_g13950 Coffea canephora HOM05D000852 ORTHO05D000657 3.4e-09 65.5 126 40.5
Gorai.008G081900 Gossypium raimondii HOM05D000852 ORTHO05D000657 3.4e-09 65.5 130 40.0
AL7G21770 Arabidopsis lyrata HOM05D000852 ORTHO05D000657 4.4e-09 65.1 123 39.8
Lsat_1_v5_gn_7_52001 Lactuca sativa HOM05D000852 ORTHO05D000657 4.4e-09 65.1 111 45.9
Lsat_1_v5_gn_7_52320 Lactuca sativa HOM05D000852 ORTHO05D000657 4.4e-09 65.1 126 38.9
AUR62039747 Chenopodium quinoa HOM05D000852 ORTHO05D000657 5.8e-09 64.7 126 38.9
Gorai.008G081500 Gossypium raimondii HOM05D000852 ORTHO05D000657 5.8e-09 64.7 128 39.1
Peaxi162Scf00384g00031 Petunia axillaris HOM05D000852 ORTHO05D000657 5.8e-09 64.7 92 46.7
Peaxi162Scf00841g00025 Petunia axillaris HOM05D000852 ORTHO05D000657 5.8e-09 64.7 92 46.7
HanXRQChr03g0065901 Helianthus annuus HOM05D000852 ORTHO05D000657 7.5e-09 64.3 126 38.1
ECA236G3135 Erigeron canadensis HOM05D000852 ORTHO05D000657 9.9e-09 63.9 120 39.2
HanXRQChr03g0065911 Helianthus annuus HOM05D000852 ORTHO05D000657 9.9e-09 63.9 132 37.9
HanXRQChr03g0065941 Helianthus annuus HOM05D000852 ORTHO05D000657 9.9e-09 63.9 126 38.1
QL02p095769 Quercus lobata HOM05D000852 ORTHO05D000657 9.9e-09 63.9 125 40.0
CARHR238280 Cardamine hirsuta HOM05D000852 ORTHO05D000657 1.3e-08 63.5 117 41.9
Dinv42777 Davidia involucrata HOM05D000852 ORTHO05D000657 1.3e-08 63.5 124 38.7
Dinv43324 Davidia involucrata HOM05D000852 ORTHO05D000657 1.3e-08 63.5 124 38.7
MD11G1210900 Malus domestica HOM05D000852 ORTHO05D000657 1.3e-08 63.5 120 37.5
Os09g0473200 Oryza sativa ssp. japonica HOM05D000852 ORTHO05D000657 1.3e-08 63.5 127 36.2
Hund08991 Selenicereus undatus HOM05D000852 ORTHO05D000657 1.3e-08 63.5 126 38.9
CSS0016582 Camellia sinensis var. sinensis HOM05D000852 ORTHO05D000657 1.7e-08 63.2 127 39.4
QL02p095803 Quercus lobata HOM05D000852 ORTHO05D000657 1.7e-08 63.2 121 39.7
Dinv42780 Davidia involucrata HOM05D000852 ORTHO05D000657 2.2e-08 62.8 126 38.1
Dinv43321 Davidia involucrata HOM05D000852 ORTHO05D000657 2.2e-08 62.8 126 38.1
CsaV3_4G002160 Cucumis sativus L. HOM05D000852 ORTHO05D000657 2.9e-08 62.4 111 43.2
FvH4_6g06300 Fragaria vesca HOM05D000852 ORTHO05D000657 2.9e-08 62.4 126 39.7
HanXRQChr09g0244331 Helianthus annuus HOM05D000852 ORTHO05D000657 2.9e-08 62.4 125 36.8
Hund08992 Selenicereus undatus HOM05D000852 ORTHO05D000657 2.9e-08 62.4 119 37.8
vmacro13077 Vaccinium macrocarpon HOM05D000852 ORTHO05D000657 2.9e-08 62.4 118 42.4
Cc06_g13920 Coffea canephora HOM05D000852 ORTHO05D000657 3.7e-08 62.0 124 37.9
Eucgr.B02700 Eucalyptus grandis HOM05D000852 ORTHO05D000657 3.7e-08 62.0 133 37.6
BcaNung02993 Brassica carinata HOM05D000852 ORTHO05D000657 4.9e-08 61.6 129 39.5
SGA_v2.0_scaffold66G22512 Striga asiatica HOM05D000852 ORTHO05D000657 4.9e-08 61.6 123 35.8
Cc06_g13940 Coffea canephora HOM05D000852 ORTHO05D000657 6.4e-08 61.2 124 38.7
Dinv43320 Davidia involucrata HOM05D000852 ORTHO05D000657 6.4e-08 61.2 126 38.9
Gohir.D06G135750 Gossypium hirsutum HOM05D000852 ORTHO05D000657 6.4e-08 61.2 125 40.0
Manes.15G137300 Manihot esculenta HOM05D000852 ORTHO05D000657 6.4e-08 61.2 115 42.6
Hund08990 Selenicereus undatus HOM05D000852 ORTHO05D000657 6.4e-08 61.2 119 37.8
FAN09G0018 Fragaria x ananassa HOM05D000852 ORTHO05D000657 8.3e-08 60.8 129 38.0
HanXRQChr03g0067771 Helianthus annuus HOM05D000852 ORTHO05D000657 8.3e-08 60.8 123 35.8
Oeu016833.1 Olea europaea HOM05D000852 ORTHO05D000657 8.3e-08 60.8 124 37.9
Sed0012822 Sechium edule HOM05D000852 ORTHO05D000657 8.3e-08 60.8 130 40.8
Aqoxy7G03229 Aquilegia oxysepala HOM05D000852 ORTHO05D000657 1.1e-07 60.5 129 34.9
EL10Ac8g18864 Beta vulgaris HOM05D000852 ORTHO05D000657 1.1e-07 60.5 126 38.9
Ciclev10010217m.g Citrus clementina HOM05D000852 ORTHO05D000657 1.1e-07 60.5 120 38.3
Migut.J01422 Erythranthe guttata HOM05D000852 ORTHO05D000657 1.1e-07 60.5 103 41.7
Oeu016834.1 Olea europaea HOM05D000852 ORTHO05D000657 1.1e-07 60.5 124 37.1
Lsat_1_v5_gn_7_51981 Lactuca sativa HOM05D000852 ORTHO05D000657 1.4e-07 60.1 111 44.1
Cfa021318 Carpinus fangiana HOM05D000852 ORTHO05D000657 1.9e-07 59.7 121 38.0
Cfa023051 Carpinus fangiana HOM05D000852 ORTHO05D000657 1.9e-07 59.7 121 38.0
Cfa023055 Carpinus fangiana HOM05D000852 ORTHO05D000657 1.9e-07 59.7 121 38.0
Lj6A733T63 Lonicera japonica HOM05D000852 ORTHO05D000657 1.9e-07 59.7 128 41.4
Dinv42781 Davidia involucrata HOM05D000852 ORTHO05D000657 2.4e-07 59.3 122 38.5
TWI34G0370 Tripterygium wilfordii HOM05D000852 ORTHO05D000657 2.4e-07 59.3 126 39.7
Aqoxy7G03227 Aquilegia oxysepala HOM05D000852 ORTHO05D000657 3.2e-07 58.9 125 35.2
Dinv42776 Davidia involucrata HOM05D000852 ORTHO05D000657 3.2e-07 58.9 126 38.1
Dinv43325 Davidia involucrata HOM05D000852 ORTHO05D000657 3.2e-07 58.9 126 38.1
ECA240G1338 Erigeron canadensis HOM05D000852 ORTHO05D000657 4.1e-07 58.5 130 34.6
Hma1.2p1_0921F.1_g236830 Hydrangea macrophylla HOM05D000852 ORTHO05D000657 4.1e-07 58.5 117 38.5
Potri.006G179300 Populus trichocarpa HOM05D000852 ORTHO05D000657 4.1e-07 58.5 118 37.3
vmacro13078 Vaccinium macrocarpon HOM05D000852 ORTHO05D000657 4.1e-07 58.5 132 38.6
Oeu008905.1 Olea europaea HOM05D000852 ORTHO05D000657 5.4e-07 58.2 117 35.9
Hma1.2p1_0921F.1_g236820 Hydrangea macrophylla HOM05D000852 ORTHO05D000657 7.1e-07 57.8 122 38.5
THA.LOC104803515 Tarenaya hassleriana HOM05D000852 ORTHO05D000657 7.1e-07 57.8 118 40.7
COL.COLO4_37516 Corchorus olitorius HOM05D000852 ORTHO05D000657 9.2e-07 57.4 115 36.5
MELO3C017822.2 Cucumis melo HOM05D000852 ORTHO05D000657 9.2e-07 57.4 104 41.3
SalBow6G0184 Salvia bowleyana HOM05D000852 ORTHO05D000657 9.2e-07 57.4 112 38.4
SalBow6G2785 Salvia bowleyana HOM05D000852 ORTHO05D000657 9.2e-07 57.4 112 38.4
Oeu016827.1 Olea europaea HOM05D000852 ORTHO05D000657 1.2e-06 57.0 110 36.4
Potri.018G098200 Populus trichocarpa HOM05D000852 ORTHO05D000657 1.2e-06 57.0 123 40.7
Prupe.1G097000 Prunus persica HOM05D000852 ORTHO05D000657 1.2e-06 57.0 125 36.0
Duzib187G0356 Durio zibethinus HOM05D000852 ORTHO05D000657 1.6e-06 56.6 132 35.6
Gohir.D12G073805 Gossypium hirsutum HOM05D000852 ORTHO05D000657 2.1e-06 56.2 128 36.7
AUR62039969 Chenopodium quinoa HOM05D000852 ORTHO05D000657 2.7e-06 55.8 90 46.7
Duzib187G1046 Durio zibethinus HOM05D000852 ORTHO05D000657 2.7e-06 55.8 132 35.6
SEGI_26291 Sequoiadendron giganteum HOM05D000852 ORTHO05D000657 2.7e-06 55.8 107 37.4
arahy.Tifrunner.gnm1.ann1.7NTE19 Arachis hypogaea HOM05D000852 ORTHO05D000657 3.5e-06 55.5 124 41.1
Lalb_Chr11g0072441 Lupinus albus HOM05D000852 ORTHO05D000657 4.6e-06 55.1 125 40.0
TWI32G1063 Tripterygium wilfordii HOM05D000852 ORTHO05D000657 4.6e-06 55.1 122 39.3
unitig_37.g12593 Utricularia gibba HOM05D000852 ORTHO05D000657 4.6e-06 55.1 107 37.4
arahy.Tifrunner.gnm1.ann1.IN9LQ3 Arachis hypogaea HOM05D000852 ORTHO05D000657 6.0e-06 54.7 108 42.6
AUR62003315 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.0e-06 54.7 124 37.9
RcHm_v2.0_Chr4g0404841 Rosa chinensis HOM05D000852 ORTHO05D000657 6.0e-06 54.7 91 40.7
TWI32G1139 Tripterygium wilfordii HOM05D000852 ORTHO05D000657 6.0e-06 54.7 112 42.0


User provided reference genes

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