Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006380.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.2e-52 209.5 106 100.0
Sopen07g002470 Solanum pennellii HOM05D009059 ORTHO05D011207 7.5e-50 200.3 106 95.3
Sopen11g012530 Solanum pennellii HOM05D009059 ORTHO05D011207 1.1e-37 159.8 106 77.4
Solyc11g028070.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 5.6e-37 157.5 106 76.4
Solyc11g028040.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 8.0e-36 153.7 106 75.5
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 6.4e-33 144.1 103 70.9
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 5.4e-32 141.0 91 75.8
Solyc07g016095.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.0e-30 135.2 91 71.4
CAN.G1610.5 Capsicum annuum HOM05D009059 ORTHO05D011207 2.5e-29 132.1 103 65.0
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.8e-28 128.6 104 65.4
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 3.6e-28 128.3 96 66.7
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.0e-27 126.7 104 62.5
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.8e-27 125.9 104 64.4
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.8e-27 125.9 104 64.4
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 1.2e-26 123.2 103 63.1
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 2.6e-26 122.1 104 60.6
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.6e-26 122.1 104 61.5
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 4.4e-26 121.3 105 63.8
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.7e-25 119.4 104 63.5
CAN.G584.67 Capsicum annuum HOM05D009059 ORTHO05D011207 2.9e-25 118.6 103 60.2
CAN.G1084.27 Capsicum annuum HOM05D009059 ORTHO05D011207 3.7e-25 118.2 103 59.2
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 8.6e-22 107.1 104 55.8
CAN.G3387.1 Capsicum annuum HOM05D009059 ORTHO05D011207 9.5e-21 103.6 82 59.8
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 1.4e-19 99.8 107 50.5
CAN.G1610.6 Capsicum annuum HOM05D009059 ORTHO05D011207 1.8e-19 99.4 81 59.3
CAN.G1084.28 Capsicum annuum HOM05D009059 ORTHO05D011207 1.2e-18 96.7 85 55.3
Peaxi162Scf00297g00815 Petunia axillaris HOM05D009059 ORTHO05D011207 1.7e-17 92.8 105 50.5
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.9e-17 92.0 83 56.6
Peaxi162Scf00297g00816 Petunia axillaris HOM05D009059 ORTHO05D011207 8.3e-17 90.5 104 45.2
Solyc07g016120.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.1e-16 90.1 59 72.9
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 7.1e-16 87.4 52 73.1
Peaxi162Scf00005g00041 Petunia axillaris HOM05D009059 ORTHO05D011207 3.5e-15 85.1 105 45.7
Solyc11g028060.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 7.8e-15 84.0 56 75.0
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 7.8e-15 84.0 55 74.5
Peaxi162Scf00005g00035 Petunia axillaris HOM05D009059 ORTHO05D011207 3.0e-14 82.0 105 44.8
Solyc07g016113.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.3e-13 78.6 106 48.1
CAN.G1084.29 Capsicum annuum HOM05D009059 ORTHO05D011207 7.3e-13 77.4 62 59.7
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 4.9e-09 64.7 77 39.0
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 4.9e-09 64.7 51 49.0
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.1e-08 63.5 67 41.8
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 1.4e-08 63.2 47 53.2
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 1.4e-08 63.2 76 40.8
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 1.9e-08 62.8 77 40.3
MD13G1012000 Malus domestica HOM05D001231 ORTHO05D001012 2.4e-08 62.4 47 53.2
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 4.1e-08 61.6 72 41.7
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 4.1e-08 61.6 47 51.1
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 7.1e-08 60.8 78 39.7
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 7.1e-08 60.8 63 39.7
CDE04G2371 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 67 43.3
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 62 43.5
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-07 60.1 87 40.2
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 1.2e-07 60.1 71 38.0
Solyc07g007755.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 78 41.0
PGSC0003DMG400015133 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 51 49.0
CDE07G0627 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 2.1e-07 59.3 68 42.6
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.1e-07 59.3 67 46.3
Phvul.003G282500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.1e-07 59.3 78 34.6
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 2.1e-07 59.3 77 39.0
AT2G31957 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 2.7e-07 58.9 70 40.0
MD16G1008900 Malus domestica HOM05D001231 ORTHO05D001012 2.7e-07 58.9 52 46.2
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 2.7e-07 58.9 45 46.7
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 2.7e-07 58.9 73 39.7
Gohir.A01G033900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.5e-07 58.5 64 43.8
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 3.5e-07 58.5 87 39.1
Sopen07g001020 Solanum pennellii HOM05D001231 ORTHO05D001012 3.5e-07 58.5 78 39.7
CAN.G976.4 Capsicum annuum HOM05D001231 ORTHO05D001012 4.6e-07 58.2 74 40.5
MD11G1108800 Malus domestica HOM05D001231 ORTHO05D001012 4.6e-07 58.2 79 39.2
Os02g0172300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 4.6e-07 58.2 60 45.0
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 4.6e-07 58.2 69 36.2
FvH4_3g14630 Fragaria vesca HOM05D020793 ORTHO05D025367 6.0e-07 57.8 47 51.1
FAN11G3346 Fragaria x ananassa HOM05D020793 ORTHO05D025367 6.0e-07 57.8 47 51.1
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 79 41.8
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 79 41.8
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 70 41.4
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 7.8e-07 57.4 68 41.2
Glyma.16G100400 Glycine max HOM05D001231 ORTHO05D001012 7.8e-07 57.4 73 35.6
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 7.8e-07 57.4 47 44.7
CAN.G458.12 Capsicum annuum HOM05D001231 ORTHO05D001012 1.0e-06 57.0 66 39.4
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 35.9
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 38.5
Prupe.1G341600 Prunus persica HOM05D001231 ORTHO05D001012 1.0e-06 57.0 48 45.8
PGSC0003DMG400015130 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 38.5
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 1.3e-06 56.6 78 35.9
Gorai.002G029600 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.3e-06 56.6 69 40.6
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 1.3e-06 56.6 69 42.0
Cc06_g07880 Coffea canephora HOM05D001231 ORTHO05D001012 1.7e-06 56.2 74 40.5
Cc06_g07890 Coffea canephora HOM05D001231 ORTHO05D001012 1.7e-06 56.2 48 43.8
Nitab4.5_0000374g0050 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.7e-06 56.2 78 37.2
Oeu059528.1 Olea europaea HOM05D001231 ORTHO05D001012 1.7e-06 56.2 78 37.2
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.7e-06 56.2 69 39.1
PGSC0003DMG400029484 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.7e-06 56.2 64 40.6
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 2.3e-06 55.8 71 38.0
FAN16G3645 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-06 55.8 75 40.0
Gohir.A01G045300 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 78 38.5
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 2.3e-06 55.8 68 41.2
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 2.3e-06 55.8 72 36.1
Hund02690 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.3e-06 55.8 70 37.1
Cc02_g09620 Coffea canephora HOM05D018349 ORTHO05D011207 3.0e-06 55.5 66 39.4
Lalb_Chr16g0392501 Lupinus albus HOM05D001231 ORTHO05D001012 3.0e-06 55.5 46 47.8
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 3.0e-06 55.5 70 41.4
Carub.0008s2442 Capsella rubella HOM05D001231 ORTHO05D001012 3.9e-06 55.1 68 35.3
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 74 37.8
FvH4_3g14470 Fragaria vesca HOM05D020793 ORTHO05D025367 3.9e-06 55.1 70 34.3
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.9e-06 55.1 75 40.0
FAN21G1429 Fragaria x ananassa HOM05D020793 ORTHO05D025367 3.9e-06 55.1 70 34.3
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 37.3
MD13G1011400 Malus domestica HOM05D001231 ORTHO05D001012 5.1e-06 54.7 79 36.7
Nitab4.5_0004431g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 5.1e-06 54.7 69 40.6
Gohir.A01G045100 Gossypium hirsutum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 78 34.6
Peaxi162Scf00120g01114 Petunia axillaris HOM05D001231 ORTHO05D001012 6.6e-06 54.3 68 35.3
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 6.6e-06 54.3 68 38.2
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 6.6e-06 54.3 69 36.2
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 79 36.7
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 6.6e-06 54.3 69 36.2
Sopen11g002190 Solanum pennellii HOM05D001231 ORTHO05D001012 6.6e-06 54.3 68 35.3
Gohir.D01G036200 Gossypium hirsutum HOM05D001231 ORTHO05D001012 8.6e-06 53.9 47 48.9
Solyc07g007710.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 8.6e-06 53.9 70 40.0
THA.LOC109116172 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 8.6e-06 53.9 77 35.1


User provided reference genes

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