Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 0.0e+00 1092.8 536 100.0
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.2e-310 1068.9 536 97.6
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.3e-286 989.2 541 90.0
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 6.0e-273 943.7 548 83.9
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.8e-269 932.2 552 84.1
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 7.7e-260 900.2 537 83.4
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 5.2e-224 781.2 546 69.0
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-223 779.2 545 69.0
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.6e-223 778.9 533 69.0
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 5.7e-223 777.7 539 70.1
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.3e-222 776.5 545 69.0
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 4.9e-222 774.6 546 69.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 8.3e-222 773.9 381 99.7
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.4e-221 772.3 552 68.1
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 5.4e-221 771.2 504 72.8
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 7.0e-221 770.8 542 69.0
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 1.2e-220 770.0 535 70.8
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-220 769.2 552 68.5
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 4.5e-220 768.1 536 69.6
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.9e-219 765.4 542 66.8
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.9e-218 762.7 537 68.0
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.3e-218 761.9 559 67.1
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 4.3e-218 761.5 526 68.1
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 2.8e-217 758.8 538 68.6
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.0e-216 755.0 542 66.6
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 6.8e-216 754.2 531 68.5
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 2.6e-215 752.3 528 68.9
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.8e-213 746.1 539 65.3
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.4e-213 745.7 534 64.8
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 2.0e-212 742.7 520 68.5
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.7e-212 742.3 537 66.9
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 3.5e-212 741.9 504 68.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 5.9e-212 741.1 500 68.6
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.7e-211 739.6 535 66.7
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 2.3e-211 739.2 538 68.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.3e-211 739.2 533 67.0
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 5.0e-211 738.0 537 67.2
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 2.5e-210 735.7 541 67.5
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 3.3e-210 735.3 530 67.7
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 4.3e-210 734.9 543 67.0
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 5.6e-210 734.6 529 65.6
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 9.5e-210 733.8 533 66.2
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.6e-209 733.0 547 66.2
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.6e-209 733.0 542 66.4
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 2.1e-209 732.6 519 67.6
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 3.6e-209 731.9 536 66.0
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.4e-208 729.9 533 66.2
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.8e-208 729.6 514 67.3
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 8.9e-208 727.2 541 63.4
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.2e-207 726.9 530 64.5
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.2e-207 726.9 534 65.7
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 7.5e-207 724.2 535 64.9
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 9.8e-207 723.8 536 64.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 6.4e-206 721.1 532 66.0
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.1e-205 720.3 528 66.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 4.1e-205 718.4 541 65.4
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.6e-204 716.5 537 65.9
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 4.6e-204 714.9 530 64.9
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.3e-203 713.4 512 66.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 6.6e-203 711.1 499 67.1
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 6.6e-203 711.1 539 63.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 8.6e-203 710.7 498 67.9
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.9e-202 709.5 515 65.4
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 7.3e-202 707.6 498 67.7
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 7.3e-202 707.6 515 68.7
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 2.8e-201 705.7 529 64.3
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-200 703.4 535 64.1
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 3.1e-200 702.2 486 67.7
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.5e-199 697.6 505 65.9
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 9.2e-197 690.6 492 67.3
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.2e-196 690.3 540 63.0
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 4.6e-196 688.3 523 63.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.3e-195 686.8 531 62.5
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.3e-195 686.0 534 63.3
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 5.1e-195 684.9 545 62.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 6.6e-195 684.5 553 62.6
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.1e-194 683.7 507 65.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 7.3e-194 681.0 461 72.0
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.2e-193 677.9 555 62.0
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.4e-192 676.8 533 62.9
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.4e-192 676.8 498 65.3
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.8e-191 671.4 464 67.0
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 2.2e-190 669.5 522 64.6
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 1.9e-189 666.4 537 60.1
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.9e-189 666.4 425 75.1
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 8.6e-187 657.5 482 65.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 1.9e-186 656.4 509 63.3
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 2.6e-183 646.0 510 61.6
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 7.6e-183 644.4 504 62.9
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 9.3e-181 637.5 540 60.2
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.3e-179 633.6 427 70.5
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 9.0e-176 620.9 417 71.9
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 8.1e-169 597.8 389 73.5
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.1e-168 597.4 602 51.5
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.4e-168 597.0 490 59.8
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 7.9e-164 581.3 529 54.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 9.3e-157 557.8 425 62.8
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.7e-156 556.2 528 53.0
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.7e-156 556.2 528 53.0
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.5e-154 550.4 381 70.9
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 6.9e-152 541.6 475 55.6
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.0e-151 540.0 439 60.4
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.2e-145 520.0 383 67.1
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 5.9e-143 511.9 345 71.6
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.7e-140 503.1 370 65.4
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.7e-137 493.8 539 50.3
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.1e-136 488.0 480 55.2
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 6.5e-134 481.9 513 52.0
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 7.2e-125 451.8 532 48.1
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 5.0e-118 429.1 435 53.1
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 3.2e-109 399.8 285 67.4
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.2e-84 318.2 458 37.8
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 4.3e-77 293.1 210 67.1
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.2e-72 275.4 235 57.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.0e-58 231.1 189 59.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-54 218.0 204 53.4
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 3.4e-50 203.8 159 63.5
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 6.7e-46 189.5 148 61.5
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.5e-45 187.6 500 29.8
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.1e-44 184.5 152 61.2
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.7e-44 183.7 127 61.4
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.8e-43 181.4 118 68.6
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 1.9e-40 171.4 144 58.3
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 2.5e-29 134.4 89 65.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 60.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 60.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 60.7
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 2.4e-27 127.9 133 53.4
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.2e-24 117.5 88 60.2
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.7e-20 104.0 75 62.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.2e-18 99.0 71 63.4
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 3.8e-09 67.4 44 68.2
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 1.2e-07 62.4 76 47.4
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 4.7e-07 60.5 283 24.4
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.0e-06 59.3 351 25.9
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.0e-06 59.3 312 23.4
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.8e-06 58.5 210 27.6
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 2.3e-06 58.2 209 28.2
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 2.3e-06 58.2 308 22.7
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 3.0e-06 57.8 327 25.1
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 3.0e-06 57.8 263 28.5
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 5.2e-06 57.0 305 25.2
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 5.2e-06 57.0 269 27.1
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 6.7e-06 56.6 306 25.8
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 6.7e-06 56.6 209 26.3
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 6.7e-06 56.6 310 23.2
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 6.7e-06 56.6 299 26.4
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 8.8e-06 56.2 324 24.1
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 8.8e-06 56.2 263 23.6


User provided reference genes

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