Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 0.0e+00 1275.4 649 100.0
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 0.0e+00 1237.6 709 90.8
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 0.0e+00 1134.8 708 84.0
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 0.0e+00 1121.7 710 82.8
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 0.0e+00 1110.5 649 88.0
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 8.9e-311 1069.7 709 79.8
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 1.2e-262 909.8 710 68.5
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 1.2e-262 909.8 710 68.5
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 1.2e-259 899.8 705 67.7
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 1.6e-259 899.4 701 67.8
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.1e-255 886.7 689 67.1
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 4.5e-254 881.3 695 66.8
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 1.3e-253 879.8 708 66.7
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 1.7e-253 879.4 710 66.5
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 2.2e-253 879.0 708 65.4
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 2.9e-253 878.6 704 67.6
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 5.4e-252 874.4 654 70.9
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 1.9e-249 865.9 695 65.8
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 2.1e-248 862.4 711 64.7
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 2.4e-247 859.0 704 65.2
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 3.1e-247 858.6 666 69.1
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 4.0e-247 858.2 690 66.2
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 1.2e-246 856.7 693 64.5
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 2.6e-246 855.5 704 64.6
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 1.0e-245 853.6 666 68.3
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 4.9e-245 851.3 710 65.8
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 1.4e-244 849.7 723 63.8
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 1.4e-244 849.7 710 64.5
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 1.9e-244 849.4 704 64.3
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 5.5e-244 847.8 704 64.3
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 9.3e-244 847.0 699 64.2
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 1.2e-243 846.7 689 65.3
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 1.6e-243 846.3 695 64.5
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 4.6e-243 844.7 697 66.7
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.6e-243 844.7 676 66.6
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 7.9e-243 844.0 663 67.3
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 1.0e-242 843.6 702 64.4
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 1.8e-242 842.8 676 66.4
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.8e-242 842.8 666 67.6
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.8e-242 842.8 688 65.1
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 2.3e-242 842.4 683 66.0
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 5.1e-242 841.3 674 67.4
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 5.1e-242 841.3 712 63.9
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 8.7e-242 840.5 665 65.0
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 1.1e-241 840.1 667 66.3
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 1.1e-241 840.1 671 65.9
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 3.3e-241 838.6 749 61.1
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 2.1e-240 835.9 713 63.8
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.8e-240 835.5 664 66.6
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 3.7e-240 835.1 702 63.7
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 3.7e-240 835.1 717 63.0
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 3.7e-240 835.1 666 67.3
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 1.4e-239 833.2 722 63.2
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 1.4e-239 833.2 703 64.4
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 5.3e-239 831.2 666 65.0
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 1.2e-238 830.1 714 63.2
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 1.2e-238 830.1 711 64.0
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 2.0e-238 829.3 699 64.1
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 4.5e-238 828.2 718 63.6
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 4.5e-238 828.2 740 61.5
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 5.8e-238 827.8 689 65.0
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 2.9e-237 825.5 720 62.4
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 3.8e-237 825.1 692 63.6
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 5.0e-237 824.7 688 63.1
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 1.1e-236 823.5 711 63.7
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 1.9e-236 822.8 711 63.7
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 2.5e-236 822.4 716 63.4
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 2.1e-235 819.3 698 64.3
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 2.7e-235 818.9 701 63.3
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 5.1e-234 814.7 721 62.1
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 1.1e-233 813.5 703 61.6
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 1.9e-233 812.8 712 63.1
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.4e-231 806.6 672 65.3
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 5.3e-231 804.7 710 61.1
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 1.9e-228 796.2 675 64.1
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 5.5e-228 794.7 687 61.1
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 8.2e-224 780.8 602 67.9
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.6e-222 775.8 656 63.7
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 2.5e-220 769.2 702 59.3
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 4.4e-217 758.4 667 61.0
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 1.2e-214 750.4 588 67.7
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 3.5e-214 748.8 518 73.2
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 2.9e-213 745.7 668 60.2
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 2.8e-208 729.2 596 63.6
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 2.0e-206 723.0 624 62.2
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 1.7e-205 719.9 630 60.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.7e-203 712.6 629 61.0
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 1.5e-201 706.8 617 62.9
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 1.8e-194 683.3 613 59.2
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 7.7e-190 667.9 562 62.6
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 6.0e-174 615.1 637 53.5
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 5.8e-169 598.6 600 54.5
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 2.9e-168 596.3 1273 34.4
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 4.1e-167 592.4 621 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 2.1e-163 580.1 656 50.0
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 3.1e-162 576.2 401 72.6
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 1.6e-155 553.9 402 67.4
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 6.6e-141 505.4 437 62.5
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 5.3e-130 469.2 535 49.7
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 9.3e-127 458.4 437 62.2
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 4.6e-126 456.1 601 45.4
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 7.9e-126 455.3 472 50.6
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 1.5e-124 451.1 334 68.9
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 2.3e-117 427.2 421 58.0
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 4.5e-113 412.9 273 74.4
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 3.2e-103 380.2 203 96.1
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 2.0e-97 360.9 225 80.9
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.3e-80 305.1 203 74.4
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 8.6e-72 275.8 562 36.3
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 3.7e-67 260.4 312 51.6
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.6e-65 255.0 292 52.7
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.2e-59 234.6 155 74.2
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 1.5e-55 221.9 278 50.4
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 1.1e-53 215.7 203 64.5
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 2.4e-50 204.5 281 47.0
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.2e-46 192.2 157 64.3
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.9e-35 154.5 103 69.9
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 5.6e-31 140.2 101 69.3
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 3.5e-25 120.9 70 82.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.3e-22 112.5 129 51.2
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.4e-21 108.2 110 50.9
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 6.9e-21 106.7 110 57.3
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 1.2e-17 95.9 53 81.1
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 4.0e-13 80.9 67 62.7
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 1.0e-11 76.3 69 55.1


User provided reference genes

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