Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 2.1e-118 429.1 225 100.0
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 4.0e-117 424.9 225 98.7
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 1.6e-110 402.9 231 93.1
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 7.5e-100 367.5 229 85.6
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 8.1e-86 320.9 238 74.4
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.1e-85 320.5 224 76.3
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.9e-82 309.7 217 77.9
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 6.0e-81 304.7 225 69.3
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 3.9e-80 302.0 232 69.0
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 2.8e-78 295.8 233 65.7
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 3.6e-78 295.4 231 67.5
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 3.6e-78 295.4 225 65.8
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 4.0e-77 292.0 227 67.4
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 1.2e-76 290.4 231 67.1
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 2.0e-76 289.7 227 66.5
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 9.9e-76 287.3 227 65.6
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 9.9e-76 287.3 232 65.5
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 9.9e-76 287.3 226 67.3
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 1.3e-75 287.0 218 69.7
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.2e-75 286.2 232 65.9
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.9e-75 285.8 232 65.5
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 3.7e-75 285.4 230 64.8
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 8.4e-75 284.3 231 64.9
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.1e-74 283.9 231 65.4
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 1.4e-74 283.5 229 65.1
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.9e-74 283.1 226 65.5
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 4.1e-74 282.0 225 66.7
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 7.1e-74 281.2 226 65.0
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 7.1e-74 281.2 231 63.6
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 9.2e-74 280.8 229 64.2
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 9.2e-74 280.8 226 64.2
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.6e-73 280.0 231 63.2
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 2.7e-73 279.3 226 63.7
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.7e-73 279.3 233 65.7
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.0e-73 278.1 226 65.9
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.0e-72 277.3 231 63.2
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 1.3e-72 276.9 229 63.8
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.7e-72 276.6 231 62.3
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.7e-72 276.6 226 63.7
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 3.9e-72 275.4 228 63.6
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 5.1e-72 275.0 225 65.3
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 1.5e-71 273.5 223 65.0
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.5e-71 273.5 227 67.0
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 3.3e-71 272.3 231 61.0
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 3.3e-71 272.3 225 61.8
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 5.6e-71 271.6 219 65.3
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 9.6e-71 270.8 229 61.1
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.2e-70 270.4 232 62.1
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 2.1e-70 269.6 231 63.2
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 8.1e-70 267.7 230 60.9
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 8.1e-70 267.7 225 64.9
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 1.1e-69 267.3 228 60.5
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.4e-69 266.9 233 59.7
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 2.4e-69 266.2 225 63.1
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 2.4e-69 266.2 225 60.4
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 2.4e-69 266.2 227 63.9
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 2.4e-69 266.2 230 61.3
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 3.1e-69 265.8 227 62.6
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 4.0e-69 265.4 229 61.6
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 6.8e-69 264.6 225 61.3
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 6.8e-69 264.6 230 60.4
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 8.9e-69 264.2 226 60.6
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.2e-68 263.8 228 62.7
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 2.0e-68 263.1 225 60.4
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 2.6e-68 262.7 224 61.2
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 5.8e-68 261.5 225 63.1
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 5.8e-68 261.5 225 63.1
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 5.8e-68 261.5 231 61.0
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 7.6e-68 261.2 225 61.8
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 7.6e-68 261.2 224 61.2
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 7.6e-68 261.2 225 61.3
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 9.9e-68 260.8 225 63.1
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.4e-66 256.1 224 60.7
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 2.4e-66 256.1 222 61.7
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 5.4e-66 255.0 223 60.1
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 7.1e-66 254.6 225 59.6
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.2e-65 253.8 220 61.4
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 2.7e-65 252.7 282 52.8
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.7e-64 250.0 218 61.0
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 5.1e-64 248.4 237 57.8
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.4e-61 239.6 229 58.5
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 5.3e-61 238.4 227 57.3
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.2e-60 237.3 225 56.4
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 3.4e-60 235.7 225 54.2
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 5.8e-60 235.0 225 55.6
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.1e-58 230.7 247 53.8
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.9e-58 229.9 226 57.5
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 1.9e-58 229.9 225 54.2
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 9.3e-58 227.6 209 58.4
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.6e-57 226.9 225 53.8
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 2.8e-54 216.1 231 51.5
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.4e-53 213.8 218 53.7
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 4.0e-53 212.2 251 49.0
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 9.0e-53 211.1 227 51.5
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 9.0e-53 211.1 205 56.1
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.7e-51 206.8 221 52.5
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.9e-51 206.1 231 51.1
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 1.1e-50 204.1 218 53.7
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 1.9e-50 203.4 225 49.3
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 3.2e-50 202.6 242 48.8
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.2e-50 202.2 227 52.0
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 1.8e-48 196.8 233 48.5
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 3.9e-48 195.7 207 55.6
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 6.7e-48 194.9 166 65.1
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.5e-47 193.0 219 49.3
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-45 187.6 165 61.8
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 1.7e-43 180.3 212 50.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 2.7e-41 172.9 160 59.4
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 6.7e-40 168.3 157 59.2
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 3.9e-32 142.5 110 66.4
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-31 139.0 261 33.3
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 4.8e-30 135.6 103 67.0
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 2.4e-29 133.3 140 55.0
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 5.3e-29 132.1 92 68.5
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 2.0e-28 130.2 107 62.6
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.0e-27 127.9 218 37.2
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.9e-27 126.3 188 43.1
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.0e-27 125.6 120 58.3
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 6.9e-21 105.1 275 30.2
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 2.0e-20 103.6 196 35.2
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.5e-20 102.4 74 70.3
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 3.8e-19 99.4 166 40.4
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.8e-19 99.4 166 40.4
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 6.5e-19 98.6 63 74.6
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 3.2e-18 96.3 91 52.7
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-17 94.4 91 52.7
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 3.6e-17 92.8 91 51.6
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 5.1e-16 89.0 91 50.5
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 4.4e-15 85.9 87 57.5
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 7.7e-12 75.1 57 61.4
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 6.5e-11 72.0 72 54.2
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 8.5e-11 71.6 77 44.2
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 3.2e-10 69.7 55 60.0
Nitab4.5_0012588g0010 Nicotiana tabacum HOM05D000681 ORTHO05D003965 9.7e-07 58.2 36 86.1


User provided reference genes

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