Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.2e-155 553.1 273 100.0
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 4.0e-140 501.5 249 98.4
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.0e-122 443.7 326 72.1
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.3e-118 428.3 250 83.2
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.5e-115 418.3 250 82.0
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 5.7e-110 401.4 252 78.2
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.1e-105 387.1 256 75.0
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.7e-101 373.2 254 72.4
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 2.4e-100 369.4 251 71.7
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 2.0e-99 366.3 255 71.4
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.9e-98 362.5 253 70.8
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 5.0e-98 361.7 252 70.2
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.1e-96 356.3 254 70.9
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.8e-95 353.2 253 69.2
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 2.3e-95 352.8 252 69.4
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 2.3e-95 352.8 251 70.5
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 4.0e-95 352.1 253 67.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 5.2e-95 351.7 249 67.9
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.2e-94 350.5 255 68.2
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 7.5e-94 347.8 255 66.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 7.0e-92 341.3 252 65.9
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 7.0e-92 341.3 254 66.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 9.1e-92 340.9 254 67.3
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.6e-91 340.1 255 65.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.0e-91 339.7 246 67.5
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 3.5e-91 339.0 261 63.6
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 7.7e-91 337.8 257 63.8
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.3e-90 337.0 220 72.7
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.3e-90 337.0 214 74.8
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 2.9e-90 335.9 250 64.8
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 2.9e-90 335.9 232 69.0
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 6.5e-90 334.7 253 64.8
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 6.5e-90 334.7 233 68.7
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.5e-90 334.3 220 71.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.9e-89 333.2 267 64.0
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 7.2e-89 331.3 251 65.3
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 9.4e-89 330.9 250 65.2
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 3.6e-88 328.9 239 67.8
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 3.6e-88 328.9 219 69.4
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.7e-88 328.6 239 67.8
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.3e-87 326.2 239 67.4
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.3e-87 326.2 252 63.5
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 5.2e-87 325.1 239 67.4
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 5.2e-87 325.1 215 73.5
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.2e-86 323.9 223 70.0
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.5e-86 323.6 220 70.0
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.0e-86 323.2 251 62.5
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.6e-86 322.8 252 63.1
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.7e-86 321.6 252 63.1
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 9.8e-86 320.9 273 61.5
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 2.2e-85 319.7 246 62.6
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.2e-85 319.7 223 68.2
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.2e-85 319.7 251 64.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.8e-85 319.3 271 60.5
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 4.8e-85 318.5 246 62.2
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.1e-84 317.4 269 60.2
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.1e-84 317.4 245 64.5
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.4e-84 317.0 216 68.5
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.4e-84 317.0 220 68.6
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 3.1e-84 315.8 252 63.9
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.1e-84 315.5 281 58.7
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.1e-84 315.5 294 54.4
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 5.4e-84 315.1 199 75.9
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.5e-83 312.4 215 69.8
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 6.6e-82 308.1 225 64.0
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 8.6e-82 307.8 238 63.9
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.5e-81 306.2 198 72.2
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 4.2e-81 305.4 248 62.5
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 7.2e-81 304.7 250 61.2
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 2.1e-80 303.1 196 70.4
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 8.0e-80 301.2 226 64.6
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.0e-79 300.8 221 67.0
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 8.9e-79 297.7 250 60.8
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.2e-78 297.4 246 60.2
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.0e-78 296.6 301 52.5
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.6e-78 296.2 239 60.7
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 3.4e-78 295.8 246 59.8
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 4.9e-77 292.0 211 65.4
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 4.1e-76 288.9 250 60.4
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 5.4e-76 288.5 226 64.2
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 7.0e-76 288.1 223 63.2
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.7e-75 286.2 226 63.3
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 3.5e-75 285.8 194 69.6
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.5e-75 285.4 252 56.3
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.3e-74 283.9 253 55.3
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.9e-74 282.7 284 51.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 6.6e-74 281.6 195 68.7
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 9.5e-73 277.7 223 60.1
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 9.5e-73 277.7 225 61.3
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 1.2e-72 277.3 223 60.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 1.2e-72 277.3 223 60.1
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 1.2e-72 277.3 223 60.1
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 3.6e-72 275.8 234 59.8
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 8.0e-72 274.6 234 59.4
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.0e-71 274.2 194 66.5
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.8e-71 273.5 220 60.5
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.8e-71 273.5 194 66.0
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 2.3e-71 273.1 226 60.6
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 3.1e-71 272.7 223 61.4
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 4.0e-71 272.3 175 73.1
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.9e-71 271.2 253 53.0
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 8.9e-71 271.2 194 64.9
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.3e-69 267.3 194 63.9
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.1e-68 264.2 223 60.1
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 2.6e-62 243.0 224 54.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 3.4e-62 242.7 215 55.3
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 2.9e-61 239.6 275 46.2
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.9e-61 238.8 252 49.6
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 8.3e-61 238.0 252 49.6
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 1.5e-54 217.2 193 52.8
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 3.7e-53 212.6 255 44.7
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 2.3e-42 176.8 144 59.7
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.7e-37 160.6 208 38.5
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 3.5e-35 152.9 186 37.6
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 5.8e-30 135.6 118 61.9
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 3.8e-29 132.9 163 37.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.2e-20 102.8 176 33.5
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 6.5e-13 79.0 88 43.2


User provided reference genes

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