Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 2.1e-222 775.4 394 100.0
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.8e-219 764.2 394 98.5
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.2e-214 749.6 394 96.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 1.5e-196 689.5 394 87.1
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.3e-195 686.4 391 87.7
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.8e-189 666.0 377 88.1
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 2.0e-188 662.5 394 83.8
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 9.6e-143 510.8 396 68.7
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 3.4e-140 502.3 399 68.9
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 8.2e-134 481.1 396 66.7
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.6e-132 476.1 404 65.1
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.0e-131 474.2 389 66.8
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.5e-130 468.4 404 64.1
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.0e-128 462.6 396 63.9
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 3.9e-128 462.2 387 66.4
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 3.3e-127 459.1 396 63.1
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.3e-126 454.9 386 63.5
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.1e-125 454.1 396 61.9
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.1e-125 454.1 385 64.7
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 2.4e-125 453.0 396 61.9
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.0e-124 449.9 392 64.0
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 3.4e-124 449.1 401 61.6
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 5.9e-124 448.4 395 62.3
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 5.0e-123 445.3 387 62.0
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.4e-122 443.7 394 62.4
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.5e-122 443.0 396 60.9
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 4.2e-122 442.2 394 60.7
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 4.6e-121 438.7 385 63.9
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 6.7e-120 434.9 395 61.5
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 2.5e-119 433.0 398 61.1
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.5e-119 433.0 396 62.1
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 3.3e-119 432.6 392 61.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 3.3e-119 432.6 399 60.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 4.3e-119 432.2 389 60.9
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.7e-118 430.3 388 61.1
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.2e-118 429.9 393 62.8
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.8e-118 429.5 394 61.4
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.8e-118 429.5 394 60.9
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 4.8e-118 428.7 389 59.1
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 4.8e-118 428.7 393 61.8
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 8.2e-118 427.9 388 61.9
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 4.1e-117 425.6 396 59.3
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 4.1e-117 425.6 396 59.8
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.3e-117 425.2 394 61.4
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 5.3e-117 425.2 390 60.8
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.2e-116 424.1 388 61.1
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.4e-116 422.5 390 61.0
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.4e-116 422.5 396 60.4
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 5.9e-116 421.8 395 60.5
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 7.7e-116 421.4 390 61.0
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.9e-115 419.5 387 59.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 3.8e-115 419.1 390 59.7
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 8.5e-115 417.9 390 60.3
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 8.5e-115 417.9 384 61.7
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 1.4e-114 417.2 384 61.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.9e-114 416.8 388 60.8
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.5e-114 416.4 384 59.9
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.2e-114 416.0 384 60.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.2e-114 416.0 384 60.9
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 2.7e-113 412.9 387 59.9
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.4e-112 410.6 387 58.9
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.4e-112 410.6 394 58.4
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.9e-112 409.1 392 59.9
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 6.7e-112 408.3 385 60.0
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 6.7e-112 408.3 381 59.6
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.7e-111 405.2 403 57.6
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 5.7e-111 405.2 395 56.2
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 7.4e-111 404.8 401 60.1
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.1e-109 401.0 404 56.4
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.8e-109 400.2 347 62.8
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 2.4e-109 399.8 401 59.4
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 3.1e-109 399.4 377 60.5
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.2e-108 397.5 389 56.3
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.5e-108 397.1 377 60.2
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.6e-108 396.4 350 64.3
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.6e-105 387.1 363 60.9
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.8e-104 383.6 402 56.2
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 3.9e-104 382.5 388 55.9
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.2e-102 376.7 394 55.3
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 8.2e-102 374.8 388 56.7
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.1e-101 374.4 386 56.2
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 3.1e-101 372.9 386 55.7
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 3.1e-101 372.9 389 54.0
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.6e-100 370.5 386 55.4
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.0e-100 370.2 386 55.4
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.5e-100 369.4 386 55.2
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 7.7e-100 368.2 386 55.2
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.0e-99 367.9 386 54.9
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.0e-99 367.9 386 56.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.3e-99 367.5 386 54.7
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-99 367.1 386 54.9
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 2.2e-99 366.7 387 53.7
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 3.8e-99 365.9 386 54.7
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 3.8e-99 365.9 408 53.7
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.1e-98 364.4 384 56.0
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.1e-98 364.4 387 54.8
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 3.2e-98 362.8 386 53.6
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 9.4e-98 361.3 389 52.7
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 9.4e-98 361.3 389 54.2
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 4.0e-96 355.9 402 51.5
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 4.0e-96 355.9 386 54.4
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.3e-95 352.8 387 55.6
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.4e-95 352.4 387 52.5
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.1e-93 347.8 388 54.6
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.2e-92 344.4 385 51.9
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 7.7e-92 341.7 365 54.8
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.5e-90 337.4 287 65.9
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.9e-90 337.0 354 53.1
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 4.2e-90 335.9 364 56.0
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 4.2e-90 335.9 364 56.0
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 6.8e-88 328.6 343 53.1
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.0e-84 317.0 338 52.4
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.2e-81 307.8 323 52.3
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.7e-81 305.8 294 60.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 3.7e-78 296.2 332 51.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 4.9e-78 295.8 297 55.9
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 8.3e-70 268.5 169 78.1
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.1e-69 268.1 260 53.8
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 5.4e-69 265.8 389 42.9
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.9e-62 243.4 301 51.2
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 6.4e-62 242.3 301 50.8
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 1.9e-53 214.2 230 53.5
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 4.6e-52 209.5 196 61.2
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.8e-49 200.3 218 57.3
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 8.4e-46 188.7 371 39.9
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.4e-40 171.4 230 41.7
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 6.2e-33 146.0 188 42.6
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 9.9e-31 138.7 182 49.5
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.9e-31 138.7 145 59.3
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.9e-30 136.3 134 52.2
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 9.3e-29 132.1 87 72.4
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 1.0e-27 128.6 171 50.9
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 3.8e-22 110.2 85 63.5
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 7.4e-18 95.9 119 45.4
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 2.6e-15 87.4 66 62.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 7.1e-13 79.3 185 31.4
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.0e-11 73.9 57 59.6
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 6.3e-09 66.2 81 44.4
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 8.2e-09 65.9 46 71.7
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 5.3e-08 63.2 75 53.3
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 6.9e-08 62.8 253 24.1
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 9.0e-08 62.4 249 28.9
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 9.0e-08 62.4 76 48.7
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.5e-07 61.6 170 27.6
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.9e-06 57.4 64 51.6


User provided reference genes

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