Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.4e-99 366.3 184 100.0
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 9.6e-45 184.1 166 65.1
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.7e-41 173.3 171 61.4
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.2e-40 168.7 164 62.8
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 6.0e-39 164.9 117 80.3
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 3.1e-35 152.5 165 52.7
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.3e-35 151.8 168 53.6
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.4e-34 149.1 168 53.0
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.3e-30 136.3 167 50.3
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.0e-30 136.0 182 48.9
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 5.1e-30 135.2 168 51.2
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 6.7e-30 134.8 168 48.8
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.9e-29 133.3 166 47.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.9e-29 133.3 166 47.6
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.5e-29 132.9 165 53.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.3e-29 132.5 167 49.7
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.3e-28 130.6 175 47.4
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.3e-28 130.6 168 48.8
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.8e-28 128.6 166 45.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.8e-28 128.6 171 48.0
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.4e-27 127.1 166 48.8
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.4e-27 126.3 175 48.6
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 5.3e-27 125.2 168 47.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 5.3e-27 125.2 169 46.7
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 9.0e-27 124.4 166 50.6
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 9.0e-27 124.4 171 48.0
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.2e-26 124.0 166 48.8
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.5e-26 123.6 166 47.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.6e-26 122.9 169 48.5
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.4e-26 122.5 169 47.9
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 4.5e-26 122.1 166 48.2
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 5.9e-26 121.7 178 46.1
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.7e-26 121.3 168 46.4
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 7.7e-26 121.3 162 48.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.3e-25 120.6 168 46.4
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.7e-25 120.2 162 48.1
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.9e-25 119.4 171 46.8
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.5e-24 116.3 171 46.8
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 4.2e-24 115.5 167 42.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.5e-24 115.2 184 46.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 9.4e-24 114.4 174 44.8
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 9.4e-24 114.4 166 47.0
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 9.4e-24 114.4 194 42.3
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.1e-23 113.2 184 46.2
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 2.7e-23 112.8 180 45.6
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.7e-23 112.8 184 44.0
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 3.6e-23 112.5 182 45.6
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 3.6e-23 112.5 183 44.3
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 4.6e-23 112.1 177 47.5
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 6.1e-23 111.7 187 42.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 6.1e-23 111.7 172 45.3
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 6.1e-23 111.7 167 41.9
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.0e-22 110.9 182 46.7
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-22 110.5 181 44.2
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-22 110.5 177 44.6
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.4e-22 110.5 210 38.1
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.8e-22 110.2 193 41.5
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 3.0e-22 109.4 172 42.4
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.0e-22 109.4 169 46.2
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.0e-22 109.4 190 45.8
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 6.7e-22 108.2 183 43.2
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 6.7e-22 108.2 188 41.5
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.5e-21 107.1 188 42.0
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 4.3e-21 105.5 205 38.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.7e-21 105.1 101 56.4
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 7.4e-21 104.8 172 43.0
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 9.7e-21 104.4 136 46.3
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.8e-20 102.8 140 46.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.1e-19 100.9 172 39.5
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.1e-19 100.9 103 55.3
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.4e-19 100.5 183 40.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.4e-19 99.8 175 38.9
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 7.7e-18 94.7 228 34.6
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.2e-17 93.2 103 54.4
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.8e-17 92.4 159 41.5
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.4e-16 90.5 165 37.6
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.6e-15 87.0 167 40.7
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 2.7e-15 86.3 169 38.5
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.8e-14 83.6 165 38.8
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 5.1e-14 82.0 175 36.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 8.8e-14 81.3 116 44.0
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 8.8e-14 81.3 180 36.1
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.1e-13 80.9 117 43.6
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.4e-13 79.0 168 36.9
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.3e-12 77.4 171 36.3
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.4e-11 73.9 180 37.2
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.8e-11 73.6 115 46.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.8e-11 73.6 185 36.8
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 9.1e-11 71.2 123 38.2
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.2e-10 70.9 101 43.6
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 2.0e-10 70.1 115 45.2
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.9e-10 68.6 121 43.0
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 5.9e-10 68.6 148 35.1
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.7e-09 67.0 150 36.7
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.7e-09 67.0 166 33.1
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 2.2e-09 66.6 83 49.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 3.8e-09 65.9 205 31.2
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 8.5e-09 64.7 110 38.2
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.5e-08 63.9 73 47.9
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.2e-08 62.8 48 64.6
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 4.2e-08 62.4 131 36.6
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.0e-07 58.2 105 36.2
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 1.8e-06 57.0 118 41.5
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.0e-06 56.2 35 77.1
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 4.0e-06 55.8 82 43.9
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 5.2e-06 55.5 35 77.1
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 6.7e-06 55.1 35 74.3


User provided reference genes

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