Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.8e-131 471.9 223 100.0
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 4.2e-119 431.4 203 99.5
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.6e-113 412.1 203 93.6
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 5.0e-96 354.8 199 83.9
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 5.9e-89 331.3 163 92.0
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 3.2e-87 325.5 161 88.8
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 8.8e-85 317.4 166 86.7
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.8e-82 309.7 189 75.7
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.2e-81 307.0 184 75.5
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.0e-80 303.9 184 75.5
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.0e-80 303.9 183 77.0
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.2e-80 302.8 184 71.7
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.8e-80 302.0 184 71.7
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.1e-79 300.4 183 74.3
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 1.1e-79 300.4 189 72.5
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.1e-79 300.4 170 78.2
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 3.2e-79 298.9 185 73.5
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 4.2e-79 298.5 181 75.1
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 5.5e-79 298.1 182 72.5
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 5.5e-79 298.1 174 77.6
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 1.2e-78 297.0 184 72.3
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 2.1e-78 296.2 182 76.9
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.7e-78 295.8 183 73.8
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 2.7e-78 295.8 186 72.6
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 3.6e-78 295.4 172 77.3
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 4.7e-78 295.0 190 72.1
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 6.1e-78 294.7 183 74.3
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 8.0e-78 294.3 172 77.3
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.0e-77 293.9 206 67.5
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.0e-77 293.9 179 72.6
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.4e-77 293.5 184 72.3
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 2.3e-77 292.7 163 81.0
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.3e-77 292.7 190 70.0
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 5.2e-77 291.6 182 73.1
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 5.2e-77 291.6 175 74.3
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 6.8e-77 291.2 184 72.3
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 6.8e-77 291.2 182 72.5
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 8.8e-77 290.8 179 72.1
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 1.5e-76 290.0 175 74.3
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.5e-76 290.0 190 68.4
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 2.6e-76 289.3 172 76.2
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 3.4e-76 288.9 184 72.3
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.4e-76 288.5 184 71.7
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 4.4e-76 288.5 185 70.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 7.5e-76 287.7 183 71.0
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 9.8e-76 287.3 179 72.1
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.3e-75 287.0 183 72.1
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.3e-75 287.0 183 72.1
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 1.7e-75 286.6 162 79.6
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 1.7e-75 286.6 187 73.8
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.8e-75 285.8 183 71.0
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.8e-75 285.8 179 74.9
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 2.8e-75 285.8 184 69.6
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.8e-75 285.8 175 70.9
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 3.7e-75 285.4 185 70.3
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.7e-75 285.4 184 69.6
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 3.7e-75 285.4 191 71.2
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 4.9e-75 285.0 174 71.8
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 8.3e-75 284.3 179 73.2
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.4e-74 282.7 185 69.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.4e-74 282.7 182 71.4
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.4e-74 281.6 183 70.5
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 5.4e-74 281.6 174 71.3
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 2.0e-73 279.6 162 75.9
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 2.7e-73 279.3 194 66.0
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.5e-73 278.9 179 72.1
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 3.5e-73 278.9 185 71.9
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.7e-72 276.6 191 65.4
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 2.9e-72 275.8 185 70.3
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 3.8e-72 275.4 187 69.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 1.5e-71 273.5 186 69.9
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 1.5e-71 273.5 186 69.9
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 2.5e-71 272.7 200 62.0
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 3.3e-71 272.3 199 64.3
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 9.5e-71 270.8 183 68.3
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 9.5e-71 270.8 182 67.6
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 2.8e-70 269.2 186 67.7
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.8e-70 269.2 189 66.1
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 3.6e-70 268.9 184 64.1
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 4.7e-70 268.5 186 68.3
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 8.0e-70 267.7 180 70.0
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 1.0e-69 267.3 186 68.8
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.4e-69 266.9 228 58.3
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 4.0e-69 265.4 180 69.4
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 4.0e-69 265.4 186 66.7
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 6.8e-69 264.6 186 66.7
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 6.8e-69 264.6 162 75.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.2e-68 263.8 186 66.7
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.5e-68 263.5 186 66.1
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.5e-68 263.5 186 66.1
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 2.0e-68 263.1 163 74.2
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 6.4e-67 258.1 188 69.1
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 7.0e-66 254.6 181 64.6
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.0e-65 253.1 230 55.7
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 4.6e-65 251.9 139 80.6
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.3e-64 249.6 184 64.7
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 4.3e-63 245.4 144 75.7
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 4.3e-63 245.4 185 63.2
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 7.3e-63 244.6 160 70.0
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 2.1e-62 243.0 149 73.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 1.8e-61 240.0 144 75.0
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 5.2e-61 238.4 268 47.8
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 5.2e-61 238.4 166 67.5
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.6e-60 236.1 163 64.4
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 3.4e-60 235.7 145 73.8
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 3.7e-59 232.3 149 70.5
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 6.4e-59 231.5 239 51.9
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.7e-57 226.1 156 66.7
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 1.9e-55 219.9 187 54.0
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 4.7e-54 215.3 129 76.0
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 8.3e-51 204.5 170 57.6
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.1e-50 204.1 151 62.9
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 3.2e-50 202.6 119 75.6
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.1e-49 199.9 155 60.0
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.7e-48 196.8 124 70.2
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.0e-48 196.1 178 52.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 4.3e-47 192.2 150 58.0
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.7e-43 180.3 127 66.9
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.1e-42 177.6 107 72.9
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 3.2e-42 176.0 104 75.0
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 4.1e-42 175.6 110 68.2
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 6.6e-40 168.3 112 67.9
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.9e-39 166.8 109 70.6
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 5.6e-39 165.2 97 74.2
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 7.6e-36 154.8 129 55.0
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 8.4e-35 151.4 91 73.6
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 8.4e-35 151.4 108 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 1.4e-34 150.6 168 44.6
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 7.8e-33 144.8 225 38.2
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 4.8e-30 135.6 85 70.6
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.2e-30 135.2 91 65.9
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 2.1e-25 120.2 82 67.1
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.1e-21 107.8 184 38.0
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 3.4e-20 102.8 98 55.1
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 2.9e-19 99.8 173 36.4
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.0e-12 77.0 44 77.3


User provided reference genes

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