Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084340.1 Solanum lycopersicum HOM05D015379 ORTHO05D017769 1.0e-136 490.0 232 100.0
Sopen06g035730 Solanum pennellii HOM05D015379 ORTHO05D017769 3.5e-92 342.0 175 93.7
PGSC0003DMG400020046 Solanum tuberosum HOM05D015379 ORTHO05D017769 3.2e-69 265.8 227 68.7
Nitab4.5_0007767g0060 Nicotiana tabacum HOM05D015379 ORTHO05D017769 3.8e-30 136.0 207 47.3
Peaxi162Scf00783g00342 Petunia axillaris HOM05D015379 ORTHO05D017769 4.9e-30 135.6 269 39.4
Peaxi162Scf00980g00008 Petunia axillaris HOM05D015379 ORTHO05D017769 1.1e-29 134.4 184 42.4
Nitab4.5_0006874g0020 Nicotiana tabacum HOM05D015379 ORTHO05D017769 1.1e-24 117.9 225 36.9
Nitab4.5_0006180g0070 Nicotiana tabacum HOM05D015379 ORTHO05D017769 4.1e-24 115.9 226 35.8
CAN.G1726.6 Capsicum annuum HOM05D015379 ORTHO05D017769 9.0e-24 114.8 146 51.4
SalBow3G2935 Salvia bowleyana HOM05D012249 ORTHO05D014194 1.5e-15 87.4 207 30.9
CSS0027010 Camellia sinensis var. sinensis HOM05D030391 ORTHO05D010368 7.7e-15 85.1 214 31.3
Actinidia21095 Actinidia chinensis HOM05D030391 ORTHO05D010368 5.0e-14 82.4 159 32.1
SalBow5G4205 Salvia bowleyana HOM05D012249 ORTHO05D014194 8.5e-14 81.6 185 32.4
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 9.4e-13 78.2 75 48.0
Cc04_g13830 Coffea canephora HOM05D010143 ORTHO05D010368 1.2e-12 77.8 92 42.4
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 4.7e-12 75.9 219 26.9
Gohir.A11G120300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 4.7e-12 75.9 118 37.3
Cc02_g08260 Coffea canephora HOM05D012249 ORTHO05D014194 1.8e-11 73.9 158 31.6
Gorai.007G134300 Gossypium raimondii HOM05D016083 ORTHO05D010368 6.7e-11 72.0 215 30.2
Oeu001437.1 Olea europaea HOM05D012249 ORTHO05D014194 6.7e-11 72.0 228 26.3
Gohir.D12G005750 Gossypium hirsutum HOM05D016083 ORTHO05D010368 8.8e-11 71.6 73 45.2
Gorai.008G005700 Gossypium raimondii HOM05D016083 ORTHO05D010368 8.8e-11 71.6 73 45.2
Thecc.03G139400 Theobroma cacao HOM05D014780 ORTHO05D010368 1.1e-10 71.2 79 39.2
Oeu037519.1 Olea europaea HOM05D012249 ORTHO05D014194 2.0e-10 70.5 241 29.9
Gohir.A12G006300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 2.6e-10 70.1 73 45.2
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 5.7e-10 68.9 91 35.2
Prupe.8G245300 Prunus persica HOM05D019654 ORTHO05D010368 5.7e-10 68.9 121 29.8
THA.LOC104823057 Tarenaya hassleriana HOM05D010143 ORTHO05D010368 5.7e-10 68.9 74 35.1
Duzib138G0353 Durio zibethinus HOM05D016083 ORTHO05D010368 1.3e-09 67.8 114 36.0
unitig_26.g10156 Utricularia gibba HOM05D012249 ORTHO05D014194 1.3e-09 67.8 177 26.0
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 1.7e-09 67.4 90 40.0
Prupe.7G246000 Prunus persica HOM05D019654 ORTHO05D010368 1.7e-09 67.4 114 31.6
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.7e-09 67.4 174 31.0
Migut.F00864 Erythranthe guttata HOM05D012249 ORTHO05D014194 3.7e-09 66.2 208 26.4
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 4.8e-09 65.9 75 40.0
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 4.8e-09 65.9 103 35.9
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 6.3e-09 65.5 89 38.2
Potri.009G126600 Populus trichocarpa HOM05D014780 ORTHO05D010368 8.2e-09 65.1 92 31.5
Carub.0001s2868 Capsella rubella HOM05D010390 ORTHO05D012282 1.1e-08 64.7 92 38.0
Haze_14991 Corylus avellana HOM05D000520 ORTHO05D011236 1.4e-08 64.3 106 36.8
ClCG09G006850 Citrullus lanatus HOM05D029525 ORTHO05D010368 1.8e-08 63.9 129 31.0
Medtr2g018790 Medicago truncatula HOM05D000520 ORTHO05D010368 2.4e-08 63.5 74 35.1
Lj4g0007031 Lotus japonicus HOM05D010143 ORTHO05D010368 4.1e-08 62.8 87 31.0
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 4.1e-08 62.8 119 31.9
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 5.3e-08 62.4 76 40.8
TPR.G39231 Trifolium pratense HOM05D010143 ORTHO05D010368 5.3e-08 62.4 96 31.2
CARHR079170 Cardamine hirsuta HOM05D010143 ORTHO05D010368 7.0e-08 62.0 102 31.4
SGA_v2.0_scaffold71G23917 Striga asiatica HOM05D012249 ORTHO05D014194 7.0e-08 62.0 197 24.4
Cfa004858 Carpinus fangiana HOM05D012249 ORTHO05D010368 9.1e-08 61.6 104 29.8
Ca_21110_v3 Cicer arietinum L. HOM05D010143 ORTHO05D010368 9.1e-08 61.6 98 31.6
Sed0006744 Sechium edule HOM05D029525 ORTHO05D010368 9.1e-08 61.6 160 28.1
Actinidia30414 Actinidia chinensis HOM05D000520 ORTHO05D010009 1.2e-07 61.2 87 41.4
DCAR_002413 Daucus carota HOM05D000520 ORTHO05D000399 1.2e-07 61.2 64 43.8
Psat4g008840 Pisum sativum HOM05D010143 ORTHO05D010368 1.2e-07 61.2 108 29.6
Potri.014G140600 Populus trichocarpa HOM05D000520 ORTHO05D011236 1.2e-07 61.2 202 26.7
PGR142G0307 Punica granatum HOM05D000520 ORTHO05D011236 1.2e-07 61.2 143 30.1
Sabra14G0106000 Salix brachista HOM05D000520 ORTHO05D011236 1.5e-07 60.8 63 44.4
Sp1g26300 Schrenkiella parvula HOM05D010390 ORTHO05D012282 1.5e-07 60.8 71 35.2
arahy.Tifrunner.gnm1.ann1.1699GZ Arachis hypogaea HOM05D000520 ORTHO05D010368 2.6e-07 60.1 146 29.5
AT1G30473 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 4.5e-07 59.3 78 39.7
COL.COLO4_13411 Corchorus olitorius HOM05D000520 ORTHO05D011236 4.5e-07 59.3 67 38.8
Migut.L00471 Erythranthe guttata HOM05D000520 ORTHO05D000399 4.5e-07 59.3 117 32.5
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 4.5e-07 59.3 82 35.4
VMungo0464G1697 Vigna mungo HOM05D000520 ORTHO05D011236 4.5e-07 59.3 81 38.3
Nn4g22054 Nelumbo nucifera HOM05D000520 ORTHO05D011236 5.9e-07 58.9 114 34.2
Atru.chr5.1356 Acer truncatum HOM05D010143 ORTHO05D010368 7.7e-07 58.5 89 33.7
CANSAT78G1556 Cannabis sativa HOM05D000520 ORTHO05D000399 7.7e-07 58.5 83 39.8
Haze_04748 Corylus avellana HOM05D027832 ORTHO05D010368 7.7e-07 58.5 69 43.5
PSO478G1494 Papaver somniferum HOM05D000520 ORTHO05D011236 7.7e-07 58.5 139 29.5
Sabra09G0097300 Salix brachista HOM05D000057 ORTHO05D010368 7.7e-07 58.5 91 29.7
GSVIVG01032941001 Vitis vinifera HOM05D000520 ORTHO05D011236 7.7e-07 58.5 104 35.6
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 1.0e-06 58.2 78 41.0
Thhalv10009879m.g Eutrema salsugineum HOM05D010390 ORTHO05D012282 1.3e-06 57.8 65 36.9
MSTRG.21832 Avicennia marina HOM05D000520 ORTHO05D000399 1.7e-06 57.4 80 41.2
AUR62038214 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.7e-06 57.4 77 40.3
ECA234G3541 Erigeron canadensis HOM05D000520 ORTHO05D000399 1.7e-06 57.4 75 42.7
MBI19_g02905_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 1.7e-06 57.4 68 42.6
PSO017G5822 Papaver somniferum HOM05D000520 ORTHO05D011236 1.7e-06 57.4 157 28.0
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.7e-06 57.4 85 35.3
VMungo1215G0488 Vigna mungo HOM05D000520 ORTHO05D000399 1.7e-06 57.4 85 34.1
Actinidia19801 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.2e-06 57.0 63 44.4
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 2.2e-06 57.0 86 37.2
DCAR_021816 Daucus carota HOM05D000520 ORTHO05D011236 2.2e-06 57.0 77 37.7
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 2.2e-06 57.0 91 31.9
MD04G1208200 Malus domestica HOM05D000520 ORTHO05D000399 2.2e-06 57.0 68 41.2
MD11G1290300 Malus domestica HOM05D019654 ORTHO05D010368 2.2e-06 57.0 123 31.7
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 2.2e-06 57.0 64 39.1
TWI56G1360 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.2e-06 57.0 76 38.2
Ciclev10018208m.g Citrus clementina HOM05D000520 ORTHO05D011236 2.9e-06 56.6 72 38.9
Lalb_Chr13g0304121 Lupinus albus HOM05D000520 ORTHO05D000399 2.9e-06 56.6 78 41.0
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 2.9e-06 56.6 83 38.6
Actinidia00088 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.8e-06 56.2 63 46.0
EL10Ac4g09331 Beta vulgaris HOM05D000520 ORTHO05D000399 3.8e-06 56.2 74 39.2
BcaB07g32656 Brassica carinata HOM05D010390 ORTHO05D012282 3.8e-06 56.2 71 35.2
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 3.8e-06 56.2 76 35.5
Carub.0006s1741 Capsella rubella HOM05D000520 ORTHO05D000399 3.8e-06 56.2 83 38.6
Dinv33258 Davidia involucrata HOM05D000520 ORTHO05D011236 3.8e-06 56.2 104 34.6
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 3.8e-06 56.2 70 40.0
Glyma.02G068700 Glycine max HOM05D000520 ORTHO05D011236 3.8e-06 56.2 135 30.4
Lj1g0011037 Lotus japonicus HOM05D000520 ORTHO05D000399 3.8e-06 56.2 78 33.3
Lj3g0008444 Lotus japonicus HOM05D000520 ORTHO05D011236 3.8e-06 56.2 63 42.9
MD12G1222200 Malus domestica HOM05D000520 ORTHO05D000399 3.8e-06 56.2 68 41.2
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 3.8e-06 56.2 64 39.1
Sc19g0004510 Simmondsia chinensis HOM05D000520 ORTHO05D000399 3.8e-06 56.2 79 39.2
Thecc.04G222100 Theobroma cacao HOM05D000520 ORTHO05D000399 3.8e-06 56.2 79 38.0
MSTRG.10015 Avicennia marina HOM05D000520 ORTHO05D000399 5.0e-06 55.8 96 34.4
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 5.0e-06 55.8 94 35.1
Hma1.2p1_0511F.1_g169070 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 5.0e-06 55.8 79 38.0
Manes.04G096100 Manihot esculenta HOM05D000520 ORTHO05D011236 5.0e-06 55.8 86 38.4
THA.LOC104821878 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 5.0e-06 55.8 68 42.6
TAR622G0348 Trochodendron aralioides HOM05D000520 ORTHO05D011236 5.0e-06 55.8 103 34.0
HPP92_013660 Vanilla planifolia HOM05D000520 ORTHO05D006660 5.0e-06 55.8 64 37.5
HPP92_013678 Vanilla planifolia HOM05D000520 ORTHO05D010009 5.0e-06 55.8 64 37.5
ATR0626G212 Amborella trichopoda HOM05D000520 ORTHO05D000399 6.5e-06 55.5 98 34.7
AT5G19090 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 6.5e-06 55.5 83 38.6
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 6.5e-06 55.5 78 39.7
CSS0034702 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 6.5e-06 55.5 89 37.1
Cpa.g.sc70.32 Carica papaya HOM05D000520 ORTHO05D000300 6.5e-06 55.5 106 34.0
Cfa006554 Carpinus fangiana HOM05D000520 ORTHO05D000399 6.5e-06 55.5 76 39.5
CDE11G0193 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 6.5e-06 55.5 67 38.8
CsaV3_1G039090 Cucumis sativus L. HOM05D000520 ORTHO05D000399 6.5e-06 55.5 63 44.4
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 6.5e-06 55.5 77 39.0
Nn4g26198 Nelumbo nucifera HOM05D000520 ORTHO05D000399 6.5e-06 55.5 91 34.1
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 6.5e-06 55.5 90 35.6
Sabra04G0095800 Salix brachista HOM05D010143 ORTHO05D010368 6.5e-06 55.5 123 29.3
Sc09g0003280 Simmondsia chinensis HOM05D000520 ORTHO05D000399 6.5e-06 55.5 74 40.5
Ah.04g159770 Amaranthus hybridus HOM05D000520 ORTHO05D000399 8.5e-06 55.1 68 42.6
BcaC05g30010 Brassica carinata HOM05D000520 ORTHO05D012153 8.5e-06 55.1 64 43.8
A05p42360 Brassica napus HOM05D000520 ORTHO05D012153 8.5e-06 55.1 64 43.8
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 8.5e-06 55.1 65 38.5
C01p10000 Brassica napus HOM05D010143 ORTHO05D010368 8.5e-06 55.1 72 31.9
C05p61970 Brassica napus HOM05D000520 ORTHO05D012153 8.5e-06 55.1 64 43.8
BolC5t34857H Brassica oleracea HOM05D000520 ORTHO05D012153 8.5e-06 55.1 64 43.8
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 8.5e-06 55.1 65 38.5
BraA05t23015Z Brassica rapa HOM05D000520 ORTHO05D012153 8.5e-06 55.1 64 43.8
CAN.G183.22 Capsicum annuum HOM05D000520 ORTHO05D000399 8.5e-06 55.1 77 36.4
Ciclev10000747m.g Citrus clementina HOM05D000520 ORTHO05D000399 8.5e-06 55.1 77 37.7
Nitab4.5_0000267g0020 Nicotiana tabacum HOM05D000520 ORTHO05D000399 8.5e-06 55.1 63 42.9
Oeu045880.1 Olea europaea HOM05D000520 ORTHO05D006660 8.5e-06 55.1 94 36.2
Peaxi162Scf00196g01022 Petunia axillaris HOM05D000520 ORTHO05D000399 8.5e-06 55.1 63 42.9
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 8.5e-06 55.1 78 38.5


User provided reference genes

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