Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.0e-125 451.4 225 100.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.4e-114 415.6 214 96.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.7e-99 365.2 214 86.4
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 4.0e-85 318.5 212 76.9
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-83 312.8 212 75.5
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 6.4e-83 311.2 212 75.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.6e-71 271.6 213 70.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.6e-71 270.8 213 70.9
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.1e-69 265.8 216 65.7
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.1e-58 230.7 213 58.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.1e-58 230.7 213 58.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.6e-57 226.9 213 57.7
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 9.0e-53 211.1 212 54.2
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.5e-50 201.8 212 50.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.0e-48 197.6 217 51.6
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.1e-48 195.3 220 53.2
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.3e-46 190.7 213 50.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 9.0e-45 184.5 214 50.0
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 2.0e-44 183.3 214 48.1
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 4.5e-44 182.2 216 47.2
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.2e-43 179.9 216 47.2
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.4e-43 177.9 213 48.8
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.5e-42 176.4 215 48.4
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 5.5e-42 175.3 213 49.8
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 5.5e-42 175.3 217 48.8
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.6e-41 173.7 214 50.9
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 4.6e-41 172.2 212 46.7
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 6.0e-41 171.8 216 49.1
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.8e-40 170.2 219 44.7
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.5e-39 166.4 211 48.8
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 3.3e-39 166.0 215 46.5
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 3.3e-39 166.0 217 46.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 5.7e-39 165.2 218 47.7
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.4e-39 164.9 218 45.9
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 7.4e-39 164.9 220 45.5
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 2.8e-38 162.9 216 46.3
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 3.7e-38 162.5 211 46.4
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 4.8e-38 162.2 170 51.2
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.8e-37 160.2 215 45.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.8e-37 160.2 215 44.7
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.8e-37 160.2 206 45.6
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 3.1e-37 159.5 215 47.0
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.3e-37 158.7 189 48.1
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 5.3e-37 158.7 220 48.2
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 6.9e-37 158.3 214 46.7
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.5e-36 157.1 220 44.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.0e-36 156.8 212 45.8
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.6e-36 156.4 220 45.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 3.4e-36 156.0 219 43.4
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.4e-36 156.0 201 49.3
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 7.6e-36 154.8 217 46.1
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-35 154.5 230 43.5
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.0e-35 154.5 220 42.7
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 2.2e-35 153.3 230 44.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.9e-35 152.9 211 46.9
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.8e-35 152.5 220 45.0
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.8e-35 152.5 221 46.2
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.0e-35 152.1 214 44.9
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 6.5e-35 151.8 217 43.8
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.4e-35 151.4 215 46.5
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-34 151.0 220 44.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-34 150.6 214 44.4
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.9e-34 150.2 219 43.4
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.2e-34 149.4 225 41.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 5.5e-34 148.7 215 46.0
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 7.2e-34 148.3 216 44.4
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.3e-34 147.9 219 47.0
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.3e-34 147.9 219 47.0
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.2e-33 147.5 218 42.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.2e-33 147.5 213 43.7
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.3e-32 144.1 220 44.1
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.3e-32 144.1 215 44.7
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.3e-32 144.1 216 46.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.9e-32 142.5 215 43.3
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 3.9e-32 142.5 217 41.5
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 5.1e-32 142.1 215 43.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.7e-32 141.7 222 41.4
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 6.7e-32 141.7 213 42.7
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 8.7e-32 141.4 223 44.4
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 3.3e-31 139.4 218 42.7
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.3e-31 139.4 231 39.8
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 5.7e-31 138.7 221 42.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.7e-31 138.7 215 42.8
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.4e-31 138.3 213 44.1
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.3e-30 137.5 175 49.7
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.2e-30 136.7 200 40.5
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.8e-30 136.3 219 42.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.8e-30 135.6 213 41.8
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 8.2e-30 134.8 212 41.0
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-29 134.4 212 41.0
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.4e-29 134.0 213 42.3
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.8e-29 133.7 229 41.5
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 3.1e-29 132.9 217 42.9
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 3.1e-29 132.9 217 42.9
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.2e-28 131.0 223 42.2
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 3.4e-28 129.4 215 40.9
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.5e-28 129.0 223 39.5
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.0e-27 127.9 177 46.9
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.9e-27 126.3 221 42.1
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.8e-27 125.9 212 42.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 3.8e-27 125.9 220 39.5
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 6.5e-27 125.2 220 43.6
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.1e-26 124.4 227 41.9
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.1e-26 124.4 217 43.3
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-26 123.6 213 39.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 3.2e-26 122.9 227 41.9
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.2e-26 122.9 214 42.5
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.2e-26 122.5 214 38.8
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 5.5e-26 122.1 215 41.4
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 9.4e-26 121.3 217 39.6
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 9.4e-26 121.3 219 39.3
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.2e-25 120.9 239 36.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 2.1e-25 120.2 219 40.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 2.1e-25 120.2 223 42.2
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 2.1e-25 120.2 170 43.5
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.6e-25 119.4 229 39.3
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 3.6e-25 119.4 211 39.8
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.6e-25 119.0 216 39.4
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 7.9e-25 118.2 214 39.3
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.0e-24 117.9 219 39.3
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.0e-24 117.9 213 39.0
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.4e-24 117.5 192 40.6
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.3e-24 116.7 223 40.8
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 2.3e-24 116.7 236 38.6
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.0e-23 113.6 211 38.4
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 4.3e-23 112.5 211 38.9
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 4.3e-23 112.5 189 39.7
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 8.2e-22 108.2 83 65.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.1e-21 106.3 217 37.8
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.3e-21 105.5 222 36.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 6.9e-21 105.1 212 35.8
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-20 104.0 218 35.8
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.0e-20 103.6 216 35.2
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.4e-20 102.8 184 39.7
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.4e-20 102.8 184 39.7
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 7.7e-20 101.7 184 38.0
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 7.7e-20 101.7 184 38.0
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 7.7e-20 101.7 220 37.7
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 6.5e-19 98.6 220 37.3
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.1e-18 97.8 212 34.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.4e-18 97.4 82 61.0
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 1.6e-17 94.0 224 35.3
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.6e-17 94.0 158 39.9
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.8e-16 90.5 92 52.2
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.9e-16 89.4 151 43.0
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.9e-16 89.4 95 53.7
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-15 87.8 213 33.3
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.0e-15 87.0 215 32.1
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 7.4e-15 85.1 217 33.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 9.7e-15 84.7 83 55.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 9.7e-15 84.7 217 35.9
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.6e-12 76.6 179 39.1
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-11 72.4 80 56.2
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 5.0e-11 72.4 80 56.2
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 3.2e-10 69.7 80 53.8
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 5.5e-10 68.9 98 44.9
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 9.4e-10 68.2 151 34.4
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 2.1e-09 67.0 79 50.6
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.1e-09 67.0 190 31.6
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 6.1e-09 65.5 63 50.8
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.2e-08 62.4 139 35.3
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-07 61.2 47 61.7
SEGI_23861 Sequoiadendron giganteum HOM05D004016 ORTHO05D385574 4.8e-06 55.8 124 33.1


User provided reference genes

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