Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084110.1 Solanum lycopersicum HOM05D002989 ORTHO05D003218 8.0e-34 146.4 66 100.0
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 2.2e-31 138.3 61 100.0
PGSC0003DMG402020059 Solanum tuberosum HOM05D002989 ORTHO05D003218 1.3e-28 129.0 61 93.4
CAN.G771.8 Capsicum annuum HOM05D002989 ORTHO05D003218 2.7e-26 121.3 64 81.2
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.6e-24 114.8 61 80.3
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.2e-23 111.7 61 82.0
Peaxi162Scf00288g01310 Petunia axillaris HOM05D002989 ORTHO05D003218 2.2e-15 85.1 52 73.1
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 6.3e-15 83.6 61 60.7
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 2.4e-14 81.6 62 62.9
SGA_v2.0_scaffold1G00529 Striga asiatica HOM05D002989 ORTHO05D003218 5.4e-14 80.5 59 61.0
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 3.5e-13 77.8 63 58.7
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 1.3e-12 75.9 61 52.5
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 6.6e-12 73.6 62 56.5
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 8.6e-12 73.2 62 54.8
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 8.6e-12 73.2 61 55.7
Oeu052360.1 Olea europaea HOM05D002989 ORTHO05D003218 1.9e-11 72.0 62 54.8
vmacro02611 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 2.5e-11 71.6 64 51.6
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 4.3e-11 70.9 61 54.1
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 1.2e-10 69.3 62 53.2
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.2e-10 69.3 62 51.6
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.2e-10 69.3 59 55.9
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.6e-10 68.9 61 52.5
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.6e-10 68.9 64 53.1
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 2.1e-10 68.6 61 54.1
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 2.8e-10 68.2 62 54.8
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 2.8e-10 68.2 62 51.6
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 4.7e-10 67.4 62 51.6
Sc17g0001190 Simmondsia chinensis HOM05D002989 ORTHO05D003218 6.1e-10 67.0 65 47.7
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 6.1e-10 67.0 59 54.2
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 8.0e-10 66.6 59 50.8
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 8.0e-10 66.6 62 53.2
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 8.0e-10 66.6 62 53.2
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.4e-09 65.9 60 53.3
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 1.4e-09 65.9 63 49.2
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 1.8e-09 65.5 62 51.6
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 4.0e-09 64.3 62 48.4
DCAR_012506 Daucus carota HOM05D002989 ORTHO05D003218 4.0e-09 64.3 69 44.9
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 4.0e-09 64.3 62 50.0
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 5.2e-09 63.9 66 51.5
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 5.2e-09 63.9 62 50.0
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 5.2e-09 63.9 67 44.8
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 6.8e-09 63.5 60 53.3
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 6.8e-09 63.5 68 48.5
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 6.8e-09 63.5 60 51.7
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 6.8e-09 63.5 58 46.6
Actinidia21825 Actinidia chinensis HOM05D002989 ORTHO05D003218 8.9e-09 63.2 62 48.4
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 8.9e-09 63.2 61 47.5
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 8.9e-09 63.2 68 45.6
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 8.9e-09 63.2 60 51.7
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.2e-08 62.8 63 49.2
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.2e-08 62.8 61 45.9
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 2.0e-08 62.0 61 47.5
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.0e-08 62.0 58 56.9
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.6e-08 61.6 62 50.0
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 2.6e-08 61.6 65 49.2
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 2.6e-08 61.6 63 47.6
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 3.4e-08 61.2 61 45.9
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 3.4e-08 61.2 64 45.3
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 4.4e-08 60.8 59 44.1
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 5.8e-08 60.5 57 49.1
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 9.8e-08 59.7 58 46.6
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 9.8e-08 59.7 58 46.6
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 9.8e-08 59.7 58 46.6
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 9.8e-08 59.7 58 46.6
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.3e-07 59.3 60 46.7
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 1.3e-07 59.3 62 43.5
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 1.3e-07 59.3 63 46.0
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 1.7e-07 58.9 59 47.5
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.7e-07 58.9 61 44.3
unitig_0.g137 Utricularia gibba HOM05D002989 ORTHO05D003218 1.7e-07 58.9 57 47.4
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 2.2e-07 58.5 59 47.5
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.2e-07 58.5 59 47.5
Sabra05G0163900 Salix brachista HOM05D002989 ORTHO05D003218 2.2e-07 58.5 60 46.7
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 2.9e-07 58.2 62 45.2
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 2.9e-07 58.2 62 46.8
QL12p042129 Quercus lobata HOM05D000097 ORTHO05D003218 2.9e-07 58.2 64 45.3
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.7e-07 57.8 59 44.1
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 3.7e-07 57.8 62 46.8
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 3.7e-07 57.8 63 44.4
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 4.9e-07 57.4 61 47.5
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 4.9e-07 57.4 62 43.5
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 4.9e-07 57.4 62 43.5
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 4.9e-07 57.4 62 43.5
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 4.9e-07 57.4 62 48.4
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 4.9e-07 57.4 62 48.4
TWI60G0894 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 4.9e-07 57.4 57 47.4
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 4.9e-07 57.4 59 50.8
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.4e-07 57.0 60 46.7
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.4e-07 57.0 60 45.0
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 6.4e-07 57.0 60 46.7
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 8.3e-07 56.6 65 43.1
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 8.3e-07 56.6 62 43.5
Rhsim01G0068400 Rhododendron simsii HOM05D002989 ORTHO05D003218 8.3e-07 56.6 62 37.1
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 1.1e-06 56.2 65 46.2
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 1.1e-06 56.2 63 44.4
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 1.1e-06 56.2 61 47.5
PGSC0003DMG401019311 Solanum tuberosum HOM05D002989 ORTHO05D003218 1.1e-06 56.2 61 47.5
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 1.4e-06 55.8 61 42.6
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 1.9e-06 55.5 64 45.3
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 1.9e-06 55.5 64 45.3
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 1.9e-06 55.5 61 47.5
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 1.9e-06 55.5 61 45.9
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 1.9e-06 55.5 66 43.9
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 2.4e-06 55.1 68 42.6
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 3.2e-06 54.7 62 45.2
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 4.1e-06 54.3 62 40.3
Ciclev10023714m.g Citrus clementina HOM05D002989 ORTHO05D003218 4.1e-06 54.3 63 46.0
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 4.1e-06 54.3 63 44.4
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 4.1e-06 54.3 66 40.9
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 5.4e-06 53.9 65 41.5
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 5.4e-06 53.9 61 44.3
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 7.0e-06 53.5 61 45.9
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 7.0e-06 53.5 62 43.5
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 9.2e-06 53.1 62 43.5
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 9.2e-06 53.1 62 43.5


User provided reference genes

Program Settings