Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 0.0e+00 1254.6 626 100.0
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 0.0e+00 1234.6 626 98.7
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 0.0e+00 1191.0 628 95.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.6e-285 984.6 641 78.5
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.1e-284 981.5 625 79.4
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 6.8e-284 980.3 625 79.4
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 2.5e-278 961.8 640 76.1
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 7.3e-177 624.8 630 54.1
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.4e-175 620.5 624 53.4
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.5e-174 617.1 640 52.7
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 3.2e-172 609.4 608 54.4
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 5.4e-172 608.6 625 52.0
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 4.0e-167 592.4 641 52.7
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 2.0e-166 590.1 626 52.4
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 2.6e-166 589.7 630 51.3
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 3.7e-165 585.9 626 52.4
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 1.9e-164 583.6 625 50.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 7.8e-163 578.2 626 52.1
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 5.0e-162 575.5 629 51.8
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 6.6e-162 575.1 626 51.0
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.7e-160 568.9 629 50.7
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 4.0e-159 565.8 632 49.5
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 5.8e-158 562.0 629 51.5
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 6.4e-157 558.5 626 50.0
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 7.3e-153 545.0 647 49.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 3.6e-152 542.7 623 49.9
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.2e-150 537.7 627 48.2
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 1.5e-150 537.3 632 47.9
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.4e-150 536.2 630 49.4
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.3e-149 534.3 626 48.6
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 2.9e-149 533.1 631 48.7
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 9.2e-148 528.1 579 51.1
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.2e-147 527.7 625 46.2
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 4.6e-147 525.8 633 48.8
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 1.0e-146 524.6 632 48.3
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.3e-146 524.2 626 48.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 3.9e-146 522.7 626 46.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 9.6e-145 518.1 626 48.2
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.7e-144 515.8 723 43.2
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.2e-142 511.1 626 46.8
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.5e-142 510.8 630 47.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 9.9e-142 508.1 627 47.4
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 1.3e-141 507.7 623 47.0
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 4.9e-141 505.8 642 45.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 8.4e-141 505.0 542 51.8
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 2.4e-140 503.4 633 45.7
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 4.2e-140 502.7 623 46.9
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 4.2e-140 502.7 623 47.4
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.7e-139 500.0 623 46.7
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.7e-139 500.0 623 46.7
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 6.0e-139 498.8 582 48.6
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 1.3e-138 497.7 627 46.9
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.0e-138 496.5 622 46.3
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 8.7e-138 495.0 626 46.5
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.1e-137 494.6 625 46.6
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.1e-137 494.6 628 47.9
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.3e-136 491.1 672 44.8
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 4.8e-136 489.2 707 43.4
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.2e-134 484.6 625 46.6
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.5e-134 484.2 627 47.2
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 7.6e-134 481.9 630 45.1
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 9.9e-134 481.5 627 44.3
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 4.9e-133 479.2 627 44.8
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 3.2e-132 476.5 615 45.2
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 7.1e-132 475.3 626 46.2
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.2e-131 474.6 481 54.3
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.6e-131 474.2 615 45.0
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 2.5e-129 466.8 629 45.8
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 6.2e-128 462.2 624 43.4
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 4.0e-127 459.5 625 45.3
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 7.6e-126 455.3 629 44.2
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 4.9e-125 452.6 494 50.2
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.8e-122 444.1 642 43.5
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 3.0e-122 443.4 635 44.3
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 3.8e-117 426.4 394 57.6
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 3.5e-115 419.9 636 43.6
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.0e-114 418.3 481 50.1
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.9e-108 397.5 659 39.6
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 4.2e-108 396.4 481 47.6
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.4e-95 354.0 394 51.3
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 6.7e-90 335.9 407 46.2
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.5e-89 334.7 351 53.3
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 7.0e-79 299.3 316 54.4
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 8.5e-77 292.4 384 43.8
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 2.1e-75 287.7 318 52.8
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 6.5e-69 266.2 277 52.7
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 1.1e-68 265.4 280 54.3
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.0e-66 258.8 321 46.4
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.8e-66 258.1 224 58.0
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 2.1e-59 234.6 330 43.0
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.6e-57 227.6 273 49.5
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 3.3e-52 210.7 330 39.1
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 1.1e-50 205.7 532 29.1
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 6.4e-48 196.4 224 51.8
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.0e-45 189.1 424 34.7
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 1.2e-43 182.2 638 27.9
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 2.6e-41 174.5 254 39.4
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 4.3e-36 157.1 293 35.5
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 7.6e-33 146.4 150 55.3
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 7.6e-33 146.4 293 34.1
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 6.6e-29 133.3 408 28.4
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 8.7e-29 132.9 175 50.3
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 4.0e-26 124.0 163 41.1
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.5e-25 122.1 149 43.6
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.6e-22 112.1 151 40.4
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 3.0e-21 107.8 215 35.3
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 8.7e-21 106.3 121 49.6
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.5e-20 105.5 121 46.3
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 3.6e-19 100.9 542 26.6
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 2.6e-17 94.7 135 45.2
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.7e-16 92.0 101 50.5
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 8.4e-16 89.7 354 26.3
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 9.3e-15 86.3 111 43.2
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.2e-14 85.9 138 40.6
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.0e-14 83.6 141 40.4
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 8.1e-11 73.2 92 41.3
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 6.9e-10 70.1 152 30.3
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 6.9e-10 70.1 193 29.5
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 3.4e-09 67.8 149 29.5
CAN.G1642.4 Capsicum annuum HOM05D006061 ORTHO05D115332 7.1e-07 60.1 34 79.4
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 3.5e-06 57.8 56 46.4
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 6.0e-06 57.0 55 47.3


User provided reference genes

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